LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01304	ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCCGCCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACAACAACCACCATCACCACCATAACAATCACCACAAGCTCGCATTCACCTCCAACAACAACAACACCAACGCCAATTGCTCTCCCTCGCTCCCCACCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACCTCCGTCCCCGAGGATTTTCGCCACCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGCATGACTCCGGAGCAGATTGAAGAGGTCCGTTCTCGGCTTAATCTTGACGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAGTCGTTTACTGATATGTGTTTGGACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTAGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTAGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTTGAGTCATTAAAAACTGCTATTGTTGTGGGTGGAACTAACATTGAGAAGCAGAGGGCGGAACTTAGAGCTGGGGTTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGGTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCGCAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGTAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCCCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGACCATGGAAGATTATGTACACCGGATTGGAAGGACCGGGCGTGCAGGATCAACTGGCTTAGCTACTTCATTTTACACTGATCGTGACATGTTCCTTGTTGCAAATATAAGGAAGGCAATAGCTGACGCCGAATCTGGGAACACGCTGACATTTGCAACCGGAAAGGTTGCTAGACGGAAGGAGAAAGAAGCAGCAGCTGCACAAAAAGAGGCAAATATTGCTTTATCCAAACAGTTAGGATTGGGAGCTGCTTCAATTAACATCGAAGATAAATATAAATTCATGATTACTGCCGCAAACATTAAAAGAGAGGGCGCAGCAGATAGTGCCTGGGACGATTAA	1725	0.4707	MSYVPPHLRNNGSAAVATARTPSVTLDNNNNNHHHHHNNHHKLAFTSNNNNTNANCSPSLPTFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLDSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGLATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLGLGAASINIEDKYKFMITAANIKREGAADSAWDD	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01304	574	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	160	336	IPR014001	-
	Viun6g01304	574	FunFam	probable ATP-dependent RNA helicase DDX17	89	339	-	-
	Viun6g01304	574	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	282	290	IPR000629	-
	Viun6g01304	574	SMART	helicmild6	396	477	IPR001650	-
	Viun6g01304	574	Pfam	Helicase conserved C-terminal domain	360	477	IPR001650	-
	Viun6g01304	574	Coils	Coil	518	538	-	-
	Viun6g01304	574	Coils	Coil	215	235	-	-
	Viun6g01304	574	Gene3D	-	89	340	IPR027417	-
	Viun6g01304	574	Gene3D	-	342	536	IPR027417	-
	Viun6g01304	574	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	129	157	IPR014014	GO:0003724
	Viun6g01304	574	CDD	SF2_C_DEAD	348	486	-	-
	Viun6g01304	574	CDD	DEADc	140	337	-	-
	Viun6g01304	574	MobiDBLite	consensus disorder prediction	63	99	-	-
	Viun6g01304	574	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	96	529	-	-
	Viun6g01304	574	Pfam	DEAD/DEAH box helicase	153	323	IPR011545	GO:0003676\|GO:0005524
	Viun6g01304	574	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	360	518	IPR001650	-
	Viun6g01304	574	SMART	ultradead3	148	351	IPR014001	-
	Viun6g01304	574	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	201	497	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01304	Viun-Chr6	22083625	22093502	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01304	129	499	Eukaryotic Initiation Factors Gene Family	AT1G72730	35.200	2.88e-68	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01304	K12823		-	gmx:100818387	995.342