LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01303	ATGTCGTATGTGCCTCCGCACCTCCGAAATAACGGCTCCGCCGCCGTCGCCACCGCCAGAACCCCCTCCGTAACCCTAGACAACAACAACAACAACCACCATCACCACCATAACAATCACCACAAGCTCGCATTCACCTCCAACAACAACAACACCAACGCCAATTGCTCTCCCTCGCTCCCCACCTTCCACAATGCCTCTCGCCGGAGCTCCGCCGCACCTCCGTCCCCGAGGATTTTCGCCACCCCTGACCCCGTCTTCCCGCAATGGCAACCCTCTGAACGCGCTTCGCGCATGACTCCGGAGCAGATTGAAGAGGTCCGTTCTCGGCTTAATCTTGACGTTACTGTTGCATCTGATTCTCCTCCTGCACCTGCACCAATAGAGTCGTTTACTGATATGTGTTTGGACTCAAGTATCATGAAGGATATTGCTTACCATGAATACACCAGGCCAACTTCGATCCAGGCACAAGCCATGCCAATTGCTCTCAGTGGAAGGGATCTATTAGGTTGTGCTGAAACTGGTAGTGGAAAGACTGCAGCTTTCACAATTCCTATGATACAGCATTGCTTAGCCCAACCTTCAATTCGGCGCAATGATGGTCCTCTGGCATTAGTTTTGGCTCCTACCAGAGAACTTGCTCAACAAATAGAAAAAGAGGTTAAAGCTTTTAGCAGATCCCTTGAGTCATTAAAAACTGCTATTGTTGTGGGTGGAACTAACATTGAGAAGCAGAGGGCGGAACTTAGAGCTGGGGTTGAAATAGCAGTTGCCACGCCTGGAAGATTCATTGATCACTTGCAACAAGGCAACACTTCCCTCTCTAGAATTTCTTTTGTTGTTCTAGACGAAGCAGATAGAATGCTGGATATGGGGTTTGAACCACAGATAAGAGAGGTAATGAGAAGTCTTCCAGAGAAGCATCAAACATTGCTTTTTAGTGCGACAATGCCTGTGGAGATTGAAGCATTAGCAAAGGAGTACTTGGCTAGCCCAGTGCAAGTGAAGGTGGGGAAAGTGAGTAGCCCAACAACTAATGTTTCGCAAACGCTTGTGAAAATTTCTGAAAACGAGAAGATTGACCGACTTCTAGACTTACTTGTAGAGGATGCATCACAGGCTGAAAAATGTGGTCATCCATTTCCATTAACAATTGTGTTTGTTGAGAGGAAGACAAGGTGCGATGAAGTTGCTGAAGCATTGGTAGCTCAAGGATTATCTGCAGTTTCTCTTCATGGTGGTCGCAGTCAGAGTGAAAGAGAGGCTGCCTTGCATGATTTTCGTAGTGGCTCTACCAACATTTTGGTTGCCACTGATGTTGCATCCCGTGGCTTGGATGTCACTGGAGTGTCCCATGTCATCAATCTAGATCTTCCCAAGCATCAGTTATGGCTGCCTCAATTATAG	1410	0.4766	MSYVPPHLRNNGSAAVATARTPSVTLDNNNNNHHHHHNNHHKLAFTSNNNNTNANCSPSLPTFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDSPPAPAPIESFTDMCLDSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRAELRAGVEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKIDRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSEREAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKHQLWLPQL	469

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01303	469	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	160	336	IPR014001	-
	Viun6g01303	469	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	282	290	IPR000629	-
	Viun6g01303	469	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	115	338	IPR027417	-
	Viun6g01303	469	Gene3D	-	89	337	IPR027417	-
	Viun6g01303	469	FunFam	probable ATP-dependent RNA helicase DDX17	89	339	-	-
	Viun6g01303	469	Coils	Coil	215	235	-	-
	Viun6g01303	469	CDD	SF2_C_DEAD	348	462	-	-
	Viun6g01303	469	Gene3D	-	338	464	IPR027417	-
	Viun6g01303	469	Pfam	Helicase conserved C-terminal domain	360	461	IPR001650	-
	Viun6g01303	469	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	129	157	IPR014014	GO:0003724
	Viun6g01303	469	CDD	DEADc	140	337	-	-
	Viun6g01303	469	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	96	461	-	-
	Viun6g01303	469	MobiDBLite	consensus disorder prediction	63	99	-	-
	Viun6g01303	469	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	275	464	IPR027417	-
	Viun6g01303	469	Pfam	DEAD/DEAH box helicase	153	323	IPR011545	GO:0003676\|GO:0005524
	Viun6g01303	469	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	360	469	IPR001650	-
	Viun6g01303	469	SMART	helicmild6	396	463	IPR001650	-
	Viun6g01303	469	SMART	ultradead3	148	351	IPR014001	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01303	Viun-Chr6	22083445	22092435	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01303	129	460	Eukaryotic Initiation Factors Gene Family	AT3G13920	34.821	1.56e-57	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01303	K12823		-	gmx:100818387	801.586