Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01300 ATGAAAGACACAATTGAAACTTCAATGACACTCACCAGCTTGCTCCACCACGTGGCTGACAAATTCCCCTCCCGCCGAGCCATTTCCGTCGCCGGGAAATACGACTTCACCCACTCCCGCCTCCACCGCCTGACAGAATCCGCCGCTGCTCGATTGGTCGCTGCCGGCATCAAACCGGGCGACGTTGTCGCCCTCGTGTTCCCCAACACCGTCGAGTTTGTTATCATGTTTCTAGCCGTCATTCGAGCGCGAGCCACAGCGGCGCCGTTAAACCCAGCTTACACGGAGGAGGAGTTTGAGTTTTACTTATCCGACTCAGATTCAAAGCTTCTAGTAACATCATTGGAAGGAAACACGCCGGCTCAAGCTGCGGCTTCGAAACTCAACATCGCTCACGCCGCGGCTTCGCTGACCCAAGCTGAAAACGAAGAAGCCGAGCTGAGTCTCTCGTTGAGCCAATCTTTTGACTCGGTTGAGTCACTCGTTAACGATCCTGCTGACGTGGCGCTTTTCCTTCACACCTCCGGAACCACGAGCCGTCCCAAGGGGGTGCCGCTGACTCAGCACAACTTGCTCTCTTCCGTGAGGAACATTGACTCGGTGTATCGACTCACTGAGTCTGACTCGACGGTGATTGTGCTTCCGCTGTTCCACGTGCACGGGTTGATCGCCGGGCTGCTGAGTTCTCTCGGCGCCGGCGCGGCGGTGGCGTTGCCGGCGGCAGGGAGGTTTTCCGCTTCAGCATTCTGGAAGGACATGATTAAGTACAACGCCACGTGGTACACCGCAGTTCCTACCATACACCAAATCATTCTGGAACGCCACTTTAACAATCCCGAACCGGTTTACCCGAGGCTCCGGTTCATCCGAAGCTGCAGCGCTTCTCTTGCACCGGCTATTATGGGTAAACTGGAGGAGGCTTTCAGTGCCCCCGTCTTGGAGGCTTATGCAATGACCGAAGCCTCGCATCTCATGGCTTCGAACCCTTTGCCCCAAGATGGACCCCACAAGGCCGGGTCAGTTGGGAAGCCCGTAGGCCAAGAAATGGGTATATTGGACGAATCGGGTCGGGTCCAGGACGTTGGAGTTAGTGGAGAGGTTTGCATTCGGGGACCCAATGTAACGAAAGGTTATAAAAACAACGTGGAAGCTAACACGGCAGCGTTTCAGTTTGGTTGGTTTCACACCGGTGACATTGGATACTTTGATTCTGATGGGTATTTGCACCTAGTGGGTCGGATCAAGGAACTCATCAACCGCGGAGGTGAAAAGATATCACCAATAGAAGTTGATGCTGTCCTTCTTTCACACCAGGACATTGCTCAAGCAGTTGCTTTCGGAGTGCCTGATCCAAAATATGGGGAGGAGATATATTGTGCTGTGATCCCAAGAGAAGGATCAAACATTGACGAGGCAGAGTTGCTAAGATACAGCAAGAAGAATCTTGCATCCTTCAAAGTCCCCAAAAAGGTTTTCATCACTGATGCTTTGCCCAAGACTGCTACAGGAAAGATTTTGCGCCGACTTGTGGCAGAACACTTCGTCTCTCAAATTTGA 1557 0.5292 MKDTIETSMTLTSLLHHVADKFPSRRAISVAGKYDFTHSRLHRLTESAAARLVAAGIKPGDVVALVFPNTVEFVIMFLAVIRARATAAPLNPAYTEEEFEFYLSDSDSKLLVTSLEGNTPAQAAASKLNIAHAAASLTQAENEEAELSLSLSQSFDSVESLVNDPADVALFLHTSGTTSRPKGVPLTQHNLLSSVRNIDSVYRLTESDSTVIVLPLFHVHGLIAGLLSSLGAGAAVALPAAGRFSASAFWKDMIKYNATWYTAVPTIHQIILERHFNNPEPVYPRLRFIRSCSASLAPAIMGKLEEAFSAPVLEAYAMTEASHLMASNPLPQDGPHKAGSVGKPVGQEMGILDESGRVQDVGVSGEVCIRGPNVTKGYKNNVEANTAAFQFGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLSHQDIAQAVAFGVPDPKYGEEIYCAVIPREGSNIDEAELLRYSKKNLASFKVPKKVFITDALPKTATGKILRRLVAEHFVSQI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01300 518 ProSitePatterns Putative AMP-binding domain signature. 171 182 IPR020845 -
Viun6g01300 518 PANTHER ACYL-COA SYNTHETASE 7 515 - -
Viun6g01300 518 Pfam AMP-binding enzyme C-terminal domain 429 504 IPR025110 -
Viun6g01300 518 Pfam AMP-binding enzyme 16 420 IPR000873 -
Viun6g01300 518 FunFam Peroxisomal-coenzyme A synthetase 10 413 - -
Viun6g01300 518 Gene3D - 2 413 IPR042099 -
Viun6g01300 518 Gene3D - 414 516 IPR045851 -
Viun6g01300 518 CDD FACL_fum10p_like 23 512 IPR045310 GO:0016874
Viun6g01300 518 SUPERFAMILY Acetyl-CoA synthetase-like 9 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01300 Viun-Chr6 22068065 22071119 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01300 10 518 Monolignol Biosynthesis Gene Families AT4G05160 31.380 4.29e-59 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01300 K22133 - gmx:100817853 866.685