Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01295 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATATGAGAATTCAGTTTTCTGCAGCAAATTCCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGTTGCACGGCATCTAGATCTTTGTTCGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGATAAAAAATAATGCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGAATGTTTGCGCGTGGTGTTGATGAAGGAAAACTTATGCAGTTCTGCAAAATTATTGAAGCTAGTGAATCCAGCAGATGGAATAATGCTCAAAGAGATGGTATCGTTTCACGTCATGGCCACAAAAACCAAGAAGCCAAATGTTCATTTGGGGAAGGAGACATTGGTTTTTCAAATGTGGTGAAGCCATCTGTTCCGTCATTAACATTTGGTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATTCACGAAGCAAATGCTCAGCCATCATTGAGTATGTACCTGGGAAATGCATCTGGGAACAACTCTGTCATGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCTTTTCATCAAGGCCAAAGATCTCGTCCTATATTTCCAAAACCACTGAAGAGTAGTGGGCTTACCATGAATGTGGAAATAGAAAAAGGTGCACTTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTTTCCGGAGATTTGAAATCTGCAGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGCGCTGAGGCATATTTCCCTACTATTTCACAATCTGAGGGTGTTCCTCTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACCCCATGCATACAGGCCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGATCCAGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTCCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACTGAGAATCCGCCATCAGGAAGTAATCATGCCAATCTTCTCCTTTCAATGAAGGGGAATGTGGAACCTAACTTTAATGGACAAAGAGAACATCCAGTTTTGGGTACTGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATGATGACAAACAATACTTCACTACAGCGAAAAGTTTCAGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCTAAAAATAAGAGGCTGCTTATTGACAATGAAGATGCCAGGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTTGTGTCAAGCCAAGCATCGTCACAATTGAGGACCAAGTATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGCACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCCGTTGATGTTCTTCTTCCTGCCAATTGGACATGTTTTGACAATATTTGGGATTCGAGAAGATGTTCATGCACAGTACCTGAAGAGCTGAGTTCAGGGGAATTAGAAAATCTTTTGAAACCCGACAAAGATTTTAAGAAGCGAAGAAGTGATGAAAAGAGCAAGTCAATCCAAGAACATGAGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGATAATCTTGTTGACACGGCCGAATCGTCGGCCGGAGCCACCACCAAACATCCTAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGCGACACAAGCCGACATGCACATGCAACGTGTGCCTGACCGTGAAGCGGCGGTTCAAAACCCTGATGCTGCGAAAGAAAAAACGGCAATCCGAACGCGAAGCAGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAAGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTTGGAGAAAGAGGTAGTGGGACTAAGCAGAAGTCAAGCTGAAGCGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCGTGACGACATGGTAATTGATTTATCAGCAGTTCTGTTTTGTGAATCAGACCCTACTACAGAACATGAATATATGAACCAAAATGATCCAAGAAGCTACAATAATGAATTGCAGAACGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCCTTATGTGGAACCAAGAAAGAAGAGATGAAGAAGACAATGAACCCAACCAAAACCACAACAATCTTTGTTAA 2739 0.4429 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKPIHCGCTASRSLFEHLDFGGIGCVSCVNTSQLSTMRNIENPNGPVSLIKNNASDRPSRSEGRMFARGVDEGKLMQFCKIIEASESSRWNNAQRDGIVSRHGHKNQEAKCSFGEGDIGFSNVVKPSVPSLTFGTLENNRSPWEIKNIHEANAQPSLSMYLGNASGNNSVMPSAGEAVEGRLEGKTSPFHQGQRSRPIFPKPLKSSGLTMNVEIEKGALSQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSAVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPTISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSPDTQDTSTSAQSNSAKGTTSAGTENPPSGSNHANLLLSMKGNVEPNFNGQREHPVLGTGTSGLLITETNGMMTNNTSLQRKVSVLEKKKTRNIGPKNKRLLIDNEDARELKLTWEEAQDLLRPPPCVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKAQWAQCDDCSKWRKLPVDVLLPANWTCFDNIWDSRRCSCTVPEELSSGELENLLKPDKDFKKRRSDEKSKSIQEHEASGLEALASAAALGDNLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCLTVKRRFKTLMLRKKKRQSEREAEAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEAGESSAAGQIDLNSDPNRDDMVIDLSAVLFCESDPTTEHEYMNQNDPRSYNNELQNGENSSLHTPQSNGEGQRHFSDLRSFASLMWNQERRDEEDNEPNQNHNNLC 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01295 912 MobiDBLite consensus disorder prediction 843 880 - -
Viun6g01295 912 MobiDBLite consensus disorder prediction 438 476 - -
Viun6g01295 912 Gene3D - 604 658 - -
Viun6g01295 912 ProSiteProfiles B3 DNA-binding domain profile. 338 439 IPR003340 GO:0003677
Viun6g01295 912 SUPERFAMILY DNA-binding pseudobarrel domain 336 438 IPR015300 -
Viun6g01295 912 MobiDBLite consensus disorder prediction 756 795 - -
Viun6g01295 912 Pfam B3 DNA binding domain 338 438 IPR003340 GO:0003677
Viun6g01295 912 FunFam B3 domain-containing transcription repressor VAL1 316 443 - -
Viun6g01295 912 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Viun6g01295 912 CDD B3_DNA 336 437 IPR003340 GO:0003677
Viun6g01295 912 Gene3D - 316 443 IPR015300 -
Viun6g01295 912 MobiDBLite consensus disorder prediction 842 912 - -
Viun6g01295 912 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 862 - -
Viun6g01295 912 SMART B3_2 338 439 IPR003340 GO:0003677
Viun6g01295 912 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Viun6g01295 912 MobiDBLite consensus disorder prediction 433 476 - -
Viun6g01295 912 MobiDBLite consensus disorder prediction 804 818 - -
Viun6g01295 912 MobiDBLite consensus disorder prediction 753 824 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01295 Viun-Chr6 22039162 22046023 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01295 1 827 B3 DNA Binding Superfamily AT2G30470 47.743 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g01295 B3 1.9e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01295 K09287 - gmx:100789848 1441.79