Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01292 ATGGGTTCTGATATTTGCGTCGTTAATGGTTCGTGCACTCATGAATGGAGAAAGGGGTGGCCTCTGCGATCTGGTGGATTCGCCCAACTGTGCTGCAAGTGCGGATTTATGGAGGAGTGGAAGGGTGACATCCATGAGCCATTATCCGCATATGAGAATTCAGTTTTCTGCAGCAAATTCCATCACCAACAAACTGGTTGGAGGGAGTGTAACTTTTGCAACAAGCCTATCCACTGTGGTTGCACGGCATCTAGATCTTTGTTCGAGCATCTTGACTTTGGTGGTATAGGATGTGTTAGCTGTGTAAATACTAGCCAACTTAGTACGATGAGGAATATTGAAAATCCAAATGGGCCTGTTTCATTGATAAAAAATAATGCAAGTGATCGGCCTTCTCGTTCTGAGGGAAGAATGTTTGCGCGTGGTGTTGATGAAGGAAAACTTATGCAGTTCTGCAAAATTATTGAAGCTAGTGAATCCAGCAGATGGAATAATGCTCAAAGAGATGGTATCGTTTCACGTCATGGCCACAAAAACCAAGAAGCCAAATGTTCATTTGGGGAAGGAGACATTGGTTTTTCAAATGTGGTGAAGCCATCTGTTCCGTCATTAACATTTGGTACATTAGAAAATAATAGGTCACCATGGGAGATTAAAAACATTCACGAAGCAAATGCTCAGCCATCATTGAGTATGTACCTGGGAAATGCATCTGGGAACAACTCTGTCATGCCTTCTGCTGGAGAGGCTGTGGAAGGAAGACTTGAGGGAAAAACATCTCCTTTTCATCAAGGCCAAAGATCTCGTCCTATATTTCCAAAACCACTGAAGAGTAGTGGGCTTACCATGAATGTGGAAATAGAAAAAGGTGCACTTTCTCAATCTCGAGTTGCTCGGCCACCTGCAGATGGCAGAGGAAAGAATCAGTTACTTCCTCGATACTGGCCGAGGATTACCGATCAAGAGCTGGAGCGACTTTCCGGAGATTTGAAATCTGCAGTTGTGCCATTATTTGAGAAGGTATTAAGTGCCAGTGATGCTGGTCGAATTGGCCGTCTTGTTCTCCCAAAAGCCTGCGCTGAGGCATATTTCCCTACTATTTCACAATCTGAGGGTGTTCCTCTGCGAATGCAAGATGTGAAGGGGAATGAGTGGACATTTCAGTTCAGATTTTGGCCAAATAACAACAGTAGAATGTATGTATTGGAGGGTGTGACCCCATGCATACAGGCCATGCAATTACGCGCTGGTGATACTGTAACATTTAGTCGGATAGATCCAGGAGGCAAACTTGTAATGGGTTTCAGAAGGGCATCAAATTCTCCAGATACACAGGATACCTCCACATCTGCACAATCTAATTCAGCAAAGGGAACCACCTCTGCTGGAACTGAGAATCCGCCATCAGGAAGTAATCATGCCAATCTTCTCCTTTCAATGAAGGGGAATGTGGAACCTAACTTTAATGGACAAAGAGAACATCCAGTTTTGGGTACTGGAACTTCTGGGTTGCTTATAACTGAAACTAATGGGATGATGACAAACAATACTTCACTACAGCGAAAAGTTTCAGTTTTAGAGAAGAAGAAGACTCGTAATATTGGGCCTAAAAATAAGAGGCTGCTTATTGACAATGAAGATGCCAGGGAGTTGAAACTTACATGGGAAGAAGCACAGGATTTACTTCGTCCTCCTCCTTGTGTCAAGCCAAGCATCGTCACAATTGAGGACCAAGTATTTGAAGAATACGATGAACCCCCAGTTTTTGGAAAGAGAACTATATTCAGTACCTGTTCTTCTGGGGTGAAGGCACAATGGGCTCAATGTGATGATTGCTCTAAATGGCGAAAGCTTCCCGTTGATGTTCTTCTTCCTGCCAATTGGACATGTTTTGACAATATTTGGGATTCGAGAAGATGTTCATGCACAGTACCTGAAGAGCTGAGTTCAGGGGAATTAGAAAATCTTTTGAAACCCGACAAAGATTTTAAGAAGCGAAGAAGTGATGAAAAGAGCAAGTCAATCCAAGAACATGAGGCATCTGGCTTGGAAGCTCTTGCCAGTGCAGCAGCCCTGGGAGATAATCTTGTTGACACGGCCGAATCGTCGGCCGGAGCCACCACCAAACATCCTAGACACCGTCCCGGCTGCTCTTGCATTGTGTGCATCCAGCCACCAAGTGGCAAGGGGCGACACAAGCCGACATGCACATGCAACGTGTGCCTGACCGTGAAGCGGCGGTTCAAAACCCTGATGCTGCGAAAGAAAAAACGGCAATCCGAACGCGAAGCAGAAGCAGAAGCTGCCCAGAAAGATCAAGTTCTCCCCAAAGAAGAGTCAGATACCAATGAAACATCAAGAGATGATGCAACTCAGTTGGAGAAAGAGGTAGTGGGACTAAGCAGAAGTCAAGCTGAAGCGGGTGAGTCCAGTGCTGCTGGACAAATTGATCTGAATTCTGATCCCAACCGTGACGACATGAACGGTGAGAATTCTTCTTTGCACACTCCTCAATCCAATGGAGAAGGTCAGAGACACTTCTCTGATCTAAGAAGCTTTGCATCCCTTATGTGGAACCAAGAAAGAAGAGATGAAGAAGACAATGAACCCAACCAAAACCACAACAATCTTTGTTAA 2637 0.4471 MGSDICVVNGSCTHEWRKGWPLRSGGFAQLCCKCGFMEEWKGDIHEPLSAYENSVFCSKFHHQQTGWRECNFCNKPIHCGCTASRSLFEHLDFGGIGCVSCVNTSQLSTMRNIENPNGPVSLIKNNASDRPSRSEGRMFARGVDEGKLMQFCKIIEASESSRWNNAQRDGIVSRHGHKNQEAKCSFGEGDIGFSNVVKPSVPSLTFGTLENNRSPWEIKNIHEANAQPSLSMYLGNASGNNSVMPSAGEAVEGRLEGKTSPFHQGQRSRPIFPKPLKSSGLTMNVEIEKGALSQSRVARPPADGRGKNQLLPRYWPRITDQELERLSGDLKSAVVPLFEKVLSASDAGRIGRLVLPKACAEAYFPTISQSEGVPLRMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQAMQLRAGDTVTFSRIDPGGKLVMGFRRASNSPDTQDTSTSAQSNSAKGTTSAGTENPPSGSNHANLLLSMKGNVEPNFNGQREHPVLGTGTSGLLITETNGMMTNNTSLQRKVSVLEKKKTRNIGPKNKRLLIDNEDARELKLTWEEAQDLLRPPPCVKPSIVTIEDQVFEEYDEPPVFGKRTIFSTCSSGVKAQWAQCDDCSKWRKLPVDVLLPANWTCFDNIWDSRRCSCTVPEELSSGELENLLKPDKDFKKRRSDEKSKSIQEHEASGLEALASAAALGDNLVDTAESSAGATTKHPRHRPGCSCIVCIQPPSGKGRHKPTCTCNVCLTVKRRFKTLMLRKKKRQSEREAEAEAAQKDQVLPKEESDTNETSRDDATQLEKEVVGLSRSQAEAGESSAAGQIDLNSDPNRDDMNGENSSLHTPQSNGEGQRHFSDLRSFASLMWNQERRDEEDNEPNQNHNNLC 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01292 878 Pfam B3 DNA binding domain 338 438 IPR003340 GO:0003677
Viun6g01292 878 SUPERFAMILY DNA-binding pseudobarrel domain 336 438 IPR015300 -
Viun6g01292 878 MobiDBLite consensus disorder prediction 438 476 - -
Viun6g01292 878 Gene3D - 604 658 - -
Viun6g01292 878 FunFam B3 domain-containing transcription repressor VAL1 316 443 - -
Viun6g01292 878 Gene3D - 316 443 IPR015300 -
Viun6g01292 878 MobiDBLite consensus disorder prediction 804 846 - -
Viun6g01292 878 ProSiteProfiles B3 DNA-binding domain profile. 338 439 IPR003340 GO:0003677
Viun6g01292 878 MobiDBLite consensus disorder prediction 756 795 - -
Viun6g01292 878 Pfam CW-type Zinc Finger 605 647 IPR011124 GO:0008270
Viun6g01292 878 CDD B3_DNA 336 437 IPR003340 GO:0003677
Viun6g01292 878 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 833 - -
Viun6g01292 878 SMART B3_2 338 439 IPR003340 GO:0003677
Viun6g01292 878 ProSiteProfiles Zinc finger CW-type profile. 600 650 IPR011124 GO:0008270
Viun6g01292 878 MobiDBLite consensus disorder prediction 753 878 - -
Viun6g01292 878 MobiDBLite consensus disorder prediction 433 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01292 Viun-Chr6 22039162 22046024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01292 1 827 B3 DNA Binding Superfamily AT2G30470 47.743 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g01292 B3 1.8e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01292 K09287 - gmx:100789848 1405.19