Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01279 ATGGACACCGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTTCCCGATTCCCTAATCCAAAAAGCCCTAAACGCTCTTCCTCTCTCCGGTGCCGACTCCCGCCTCAAGAAGACCCTTCTCCTACGCACTCTCCGCTGCCTCCTCCTCAAGGCCTCCCTCTCGGAAACTGTGCTCCAAATCCTCGAACTCCTCGAAGAAATCGACGGTGCCTCCACCTCTGTCGCGCTCCGCCGAGCGTACGTAGCCGTTGCCGTCGAGTGCACTGTAAAGTACCTCGCCGCCGCACCCGATGATCCAGAGGGGGAGTTTTCTGGCGCCGTGAGGCGGATCTGGCGCGGCCGCGTGGCGGCGGTGGAGGCGCGCCGGAGTGGGCTTATGTCTGGCGAGCTGACGCGGTGGCGGGACGACGTGGAGGCAGCGCTTGGGGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTGAATAGCAGGAGGGAGGCAATGAAAGAGTTGATGACCTATTTGAACGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCAAGCAGAAAGAGGATTTTGTTGTTAGTGGTAACTGGATTGATAATGGTCATGATAATGGAAATGATGGTGATCATGCATGCATGGAGGATGTGGCAATGCATGATGAGAATCAGGCCATGCAACAATTGGAAGAGAAAATTGATGCGAATCCGGAAGTGGGTGGGTGTGACTTGCCACTTCAGAGAGATAAAGTTGTAAGATCAAAATTGGCGACAAGTGATACAAATATTGAGCCACCTATTGAAAACCAGAGTCCAGATGTAGATGTACCAGATCCAAATGTTTGCCGGAGTATTGTACTTTTTCAGTCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTGATATGCATCAGCCCAACTTAATGGAACGAAACAGAACTGCCCACACGCTTGAGTGGGATGATTCAATAGACAACTCGCCACAAGTAATACAGCCTAGGAGGAAGAAAAGGAAATGGAGTTCGTTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACGATCAGAAGTTTTTACAGTAACATATTTGACAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGATTACCCTAA 1206 0.5066 MDTDISRWVMEFLLRSSVPDSLIQKALNALPLSGADSRLKKTLLLRTLRCLLLKASLSETVLQILELLEEIDGASTSVALRRAYVAVAVECTVKYLAAAPDDPEGEFSGAVRRIWRGRVAAVEARRSGLMSGELTRWRDDVEAALGDSRACERLADLNSRREAMKELMTYLNEAWESMGPSFLESVAAMSKGLTKQKEDFVVSGNWIDNGHDNGNDGDHACMEDVAMHDENQAMQQLEEKIDANPEVGGCDLPLQRDKVVRSKLATSDTNIEPPIENQSPDVDVPDPNVCRSIVLFQSNDANLGKKSSVHCSDMHQPNLMERNRTAHTLEWDDSIDNSPQVIQPRRKKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFDNRSGVDLKDKWRNMIRLP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01279 401 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 343 401 IPR017930 -
Viun6g01279 401 Gene3D - 341 400 - -
Viun6g01279 401 SUPERFAMILY Homeodomain-like 344 399 IPR009057 -
Viun6g01279 401 CDD SANT_TRF 349 399 - -
Viun6g01279 401 Pfam Myb-like DNA-binding domain 348 397 IPR001005 -
Viun6g01279 401 ProSiteProfiles Myb-like domain profile. 343 398 IPR001005 -
Viun6g01279 401 PANTHER MYB TRANSCRIPTION FACTOR 1 399 - -
Viun6g01279 401 SMART sant 347 400 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01279 Viun-Chr6 21888811 21898233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01279 351 398 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.37e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g01279 Myb_DNA-binding 8.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01279 - K11111 vun:114187915 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01279 6 21888811 21898233 Viun6g01279 6 21888811 21898233 ECH