Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01278 ATGGACACCGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTTCCCGATTCCCTAATCCAAAAAGCCCTAAACGCTCTTCCTCTCTCCGGTGCCGACTCCCGCCTCAAGAAGACCCTTCTCCTACGCACTCTCCGCTGCCTCCTCCTCAAGGCCTCCCTCTCGGAAACTGTGCTCCAAATCCTCGAACTCCTCGAAGAAATCGACGGTGCCTCCACCTCTGTCGCGCTCCGCCGAGCGTACGTAGCCGTTGCCGTCGAGTGCACTGTAAAGTACCTCGCCGCCGCACCCGATGATCCAGAGGGGGAGTTTTCTGGCGCCGTGAGGCGGATCTGGCGCGGCCGCGTGGCGGCGGTGGAGGCGCGCCGGAGTGGGCTTATGTCTGGCGAGCTGACGCGGTGGCGGGACGACGTGGAGGCAGCGCTTGGGGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTGAATAGCAGGAGGGAGGCAATGAAAGAGTTGATGACCTATTTGAACGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCAAGCAGAAAGAGGATTTTGTTGTTAGTGGTAACTGGATTGATAATGGTCATGATAATGGAAATGATGGTGATCATGCATGCATGGAGGATGTGGCAATGCATGATGAGAATCAGGCCATGCAACAATTGGAAGAGAAAATTGATGCGAATCCGGAAGTGGGTGGGTGTGACTTGCCACTTCAGAGAGATAAAGGGGAACTCGAGTCCGCAAAATCAGGGAGCAAACATGATTCTGTTCGTAGTTCTGAAGTCAGAAAAGTTAGAGAATCCCTTAAATCAAGTTCTTACGATTTAAGAGCATTGGTCAATGATCCTCTTCCTGATGCATTGCATTTATCTGAAGTTGTAAGATCAAAATTGGCGACAAGTGATACAAATATTGAGCCACCTATTGAAAACCAGAGTCCAGATGTAGATGTACCAGATCCAAATGTTTGCCGGAGTATTGTACTTTTTCAGTCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTGATATGCATCAGCCCAACTTAATGGAACGAAACAGAACTGCCCACACGCTTGAGTGGGATGATTCAATAGACAACTCGCCACAAGTAATACAGCCTAGGAGGAAGAAAAGGAAATGGAGTTCGTTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACGATCAGAAGTTTTTACAGTAACATATTTGACAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGATTACCCTAA 1356 0.4948 MDTDISRWVMEFLLRSSVPDSLIQKALNALPLSGADSRLKKTLLLRTLRCLLLKASLSETVLQILELLEEIDGASTSVALRRAYVAVAVECTVKYLAAAPDDPEGEFSGAVRRIWRGRVAAVEARRSGLMSGELTRWRDDVEAALGDSRACERLADLNSRREAMKELMTYLNEAWESMGPSFLESVAAMSKGLTKQKEDFVVSGNWIDNGHDNGNDGDHACMEDVAMHDENQAMQQLEEKIDANPEVGGCDLPLQRDKGELESAKSGSKHDSVRSSEVRKVRESLKSSSYDLRALVNDPLPDALHLSEVVRSKLATSDTNIEPPIENQSPDVDVPDPNVCRSIVLFQSNDANLGKKSSVHCSDMHQPNLMERNRTAHTLEWDDSIDNSPQVIQPRRKKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFDNRSGVDLKDKWRNMIRLP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01278 451 ProSiteProfiles Myb-like domain profile. 393 448 IPR001005 -
Viun6g01278 451 Gene3D - 391 450 - -
Viun6g01278 451 PANTHER MYB TRANSCRIPTION FACTOR 1 449 - -
Viun6g01278 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 393 451 IPR017930 -
Viun6g01278 451 CDD SANT_TRF 399 449 - -
Viun6g01278 451 SMART sant 397 450 IPR001005 -
Viun6g01278 451 SUPERFAMILY Homeodomain-like 394 449 IPR009057 -
Viun6g01278 451 MobiDBLite consensus disorder prediction 260 283 - -
Viun6g01278 451 Pfam Myb-like DNA-binding domain 398 447 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01278 Viun-Chr6 21888811 21898233 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01278 401 448 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.72e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g01278 Myb_DNA-binding 1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01278 - K11111 vun:114187915 835.099