Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01272 ATGGACACCGACATTTCCCGGTGGGTGATGGAGTTCCTCCTCCGCAGTTCCGTTCCCGATTCCCTAATCCAAAAAGCCCTAAACGCTCTTCCTCTCTCCGGTGCCGACTCCCGCCTCAAGAAGACCCTTCTCCTACGCACTCTCCGCTGCCTCCTCCTCAAGGCCTCCCTCTCGGAAACTGTGCTCCAAATCCTCGAACTCCTCGAAGAAATCGACGGTGCCTCCACCTCTGTCGCGCTCCGCCGAGCGTACGTAGCCGTTGCCGTCGAGTGCACTGTAAAGTACCTCGCCGCCGCACCCGATGATCCAGAGGGGGAGTTTTCTGGCGCCGTGAGGCGGATCTGGCGCGGCCGCGTGGCGGCGGTGGAGGCGCGCCGGAGTGGGCTTATGTCTGGCGAGCTGACGCGGTGGCGGGACGACGTGGAGGCAGCGCTTGGGGATTCTAGGGCTTGCGAGAGGCTGGCGGATTTGAATAGCAGGAGGGAGGCAATGAAAGAGTTGATGACCTATTTGAACGAAGCGTGGGAATCGATGGGTCCTTCGTTCTTGGAATCGGTTGCGGCGATGTCGAAGGGTTTAACCAAGCAGAAAGAGGATTTTGTTGTTAGTGGTAACTGGATTGATAATGGTCATGATAATGGAAATGATGGTGATCATGCATGCATGGAGGATGTGGCAATGCATGATGAGAATCAGGCCATGCAACAATTGGAAGAGAAAATTGATGCGAATCCGGAAGTGGGTGGGTGTGACTTGCCACTTCAGAGAGATAAAGTAATTCAAAAGCGGAATCTTCGTGTTAAACACAAACACTCTACAATTCGTGCATGTCATAAGGGAGTTAAAATAAATAATTCAGGGGAACTCGAGTCCGCAAAATCAGGGAGCAAACATGATTCTGTTCGTAGTTCTGAAGTCAGAAAAGTTAGAGAATCCCTTAAATCAAGTTCTTACGATTTAAGAGCATTGGTCAATGATCCTCTTCCTGATGCATTGCATTTATCTGAAGTTGTAAGATCAAAATTGGCGACAAGTGATACAAATATTGAGCCACCTATTGAAAACCAGAGTCCAGATGTAGATGTACCAGATCCAAATGTTTGCCGGAGTATTGTACTTTTTCAGTCTAATGATGCCAATCTTGGGAAGAAGTCTTCTGTTCATTGTAGTGATATGCATCAGCCCAACTTAATGGAACGAAACAGAACTGCCCACACGCTTGAGTGGGATGATTCAATAGACAACTCGCCACAAGTAATACAGCCTAGGAGGAAGAAAAGGAAATGGAGTTCGTTGGAAGAGGAGACACTAAGGGCTGGTGTAAAAATGTTTGGAGAAGGAAACTGGGCAACGATCAGAAGTTTTTACAGTAACATATTTGACAACAGAAGTGGAGTTGATCTGAAGGACAAGTGGAGAAACATGATACGATTACCCTAA 1440 0.4847 MDTDISRWVMEFLLRSSVPDSLIQKALNALPLSGADSRLKKTLLLRTLRCLLLKASLSETVLQILELLEEIDGASTSVALRRAYVAVAVECTVKYLAAAPDDPEGEFSGAVRRIWRGRVAAVEARRSGLMSGELTRWRDDVEAALGDSRACERLADLNSRREAMKELMTYLNEAWESMGPSFLESVAAMSKGLTKQKEDFVVSGNWIDNGHDNGNDGDHACMEDVAMHDENQAMQQLEEKIDANPEVGGCDLPLQRDKVIQKRNLRVKHKHSTIRACHKGVKINNSGELESAKSGSKHDSVRSSEVRKVRESLKSSSYDLRALVNDPLPDALHLSEVVRSKLATSDTNIEPPIENQSPDVDVPDPNVCRSIVLFQSNDANLGKKSSVHCSDMHQPNLMERNRTAHTLEWDDSIDNSPQVIQPRRKKRKWSSLEEETLRAGVKMFGEGNWATIRSFYSNIFDNRSGVDLKDKWRNMIRLP 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01272 479 MobiDBLite consensus disorder prediction 292 308 - -
Viun6g01272 479 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 421 479 IPR017930 -
Viun6g01272 479 MobiDBLite consensus disorder prediction 285 308 - -
Viun6g01272 479 SUPERFAMILY Homeodomain-like 422 477 IPR009057 -
Viun6g01272 479 PANTHER MYB TRANSCRIPTION FACTOR 1 477 - -
Viun6g01272 479 Gene3D - 419 478 - -
Viun6g01272 479 SMART sant 425 478 IPR001005 -
Viun6g01272 479 CDD SANT_TRF 427 477 - -
Viun6g01272 479 ProSiteProfiles Myb-like domain profile. 421 476 IPR001005 -
Viun6g01272 479 Pfam Myb-like DNA-binding domain 426 475 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01272 Viun-Chr6 21888811 21898233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01272 429 476 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 1.82e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g01272 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01272 - K11111 vun:114187915 906.746