Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01271 ATGGCTGGTGGCAGAAGAAACTACAAAGGAACACAGTTTTCTCTTCTCACTTGTTTCTCTTGTTTTCTGGTGACAGTGATCATGTCGAGAAGAAAGGTGCAACTCACATTCATAGCCAATAACTCAGATAGGAAGGCATCATATATCAAAAGGAAGAAGTCACTGCTGAAGAAGACTGAGGAAATCAGCACCCTTTGTGGTGTTGAAGCATGCACAATAGTTTATGGCCCTTATGCTCCTGTGCCAGATGTTTGGACATCCAAATCTGGTGTTCAAAACGTGGTGGAAAAGTTCAGGAATACATGTGAGCATAACAAGAAGATGGCGACTCAAGAGAGTTTCCTTTCGGAAAGAATCGCCAAGGGTAGAGAGAAGATGAAGAAACATGTTAGGAGCAACCAAGAGAAGGAGATGACCATGTTCATGTTTCAGTGCCTTAAGAATGGGAGGGTTGAGCTTCTCAATAACTTGACCCCAGATGATTTGAATGTTCTTTCATCAGTGATTGATAGCAAATTGAGGGATATTAATAAAAAGATGGAAACTTTGAATGTTTCTGAGATGCTACCAAACCAAATCCAGATGATGCCACCACCAGCAGTACTACCAGTAGCAGCACCAGAAAACATCATCGTACCACCAAATCATGGCGATGGAACATATTTGAATTCTGATGACCCCTTGCAAAGCCAGTGGTTCATGGAGTTGCTCAATGATAATGGTGATGAGGAGACAATGAAGTCTTCATTTGGAGATCCTAATCTCCCACCACTCTGA 777 0.4208 MAGGRRNYKGTQFSLLTCFSCFLVTVIMSRRKVQLTFIANNSDRKASYIKRKKSLLKKTEEISTLCGVEACTIVYGPYAPVPDVWTSKSGVQNVVEKFRNTCEHNKKMATQESFLSERIAKGREKMKKHVRSNQEKEMTMFMFQCLKNGRVELLNNLTPDDLNVLSSVIDSKLRDINKKMETLNVSEMLPNQIQMMPPPAVLPVAAPENIIVPPNHGDGTYLNSDDPLQSQWFMELLNDNGDEETMKSSFGDPNLPPL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01271 258 FunFam Agamous-like MADS-box protein AGL80 40 123 - -
Viun6g01271 258 PRINTS MADS domain signature 50 65 IPR002100 GO:0003677|GO:0046983
Viun6g01271 258 PRINTS MADS domain signature 30 50 IPR002100 GO:0003677|GO:0046983
Viun6g01271 258 PRINTS MADS domain signature 65 86 IPR002100 GO:0003677|GO:0046983
Viun6g01271 258 SMART madsneu2 28 87 IPR002100 GO:0003677|GO:0046983
Viun6g01271 258 Gene3D - 40 122 IPR036879 GO:0003677|GO:0046983
Viun6g01271 258 CDD MADS_SRF_like 30 109 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun6g01271 258 ProSiteProfiles MADS-box domain profile. 28 88 IPR002100 GO:0003677|GO:0046983
Viun6g01271 258 PANTHER MADS BOX PROTEIN 30 181 - -
Viun6g01271 258 SUPERFAMILY SRF-like 28 108 IPR036879 GO:0003677|GO:0046983
Viun6g01271 258 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 77 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01271 Viun-Chr6 21868528 21869304 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01271 28 215 Type I MADS-box Gene Family AT5G48670 44.737 1.21e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun6g01271 SRF-TF 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01271 - - vun:114188526 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01271 6 21868528 21869304 Viun6g01271 6 21868528 21869304 ECH