Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01270 ATGTTGAAGAAGATTGAAGAACTGAGCACCCTTTGTGGCGTAGAAGCATGTGCCATAGTGTATAGCAGCTTTGATCAAGAGCCACAGATTTGGCCATCAGAATCAGGTGTGAAGAACGTGGTTGAAAAGTTCAGGGCCATGCCTGAATGGAAGAAGCACAAGATGGGGAATCAGGAGAGTGTGATGGAAAAGAGTATTGTGAAGGGTAAAAGGAAGATTACGAAACTTGAGGAAGAGAATAAGGAAATGGAGATTACCATGTTCGTGTTTCAATGCCTTGATAAAACTAGGGTTCAGCCTCCACATAACATGACTTTGCCAGATTTGAATCTTCTGTCATCGGTGATTGAACAGAAACTGAACGACATTAGTAGAAGGTTGGATTTCACAGATGTTACTGACATTGTAGATACTAATCTTAAACTCTAA 429 0.4079 MLKKIEELSTLCGVEACAIVYSSFDQEPQIWPSESGVKNVVEKFRAMPEWKKHKMGNQESVMEKSIVKGKRKITKLEEENKEMEITMFVFQCLDKTRVQPPHNMTLPDLNLLSSVIEQKLNDISRRLDFTDVTDIVDTNLKL 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01270 142 Coils Coil 66 86 - -
Viun6g01270 142 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 2 23 IPR002100 GO:0003677|GO:0046983
Viun6g01270 142 SUPERFAMILY SRF-like 1 55 IPR036879 GO:0003677|GO:0046983
Viun6g01270 142 Gene3D - 1 72 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01270 Viun-Chr6 21861944 21862446 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01270 5 128 Type I MADS-box Gene Family AT5G48670 41.600 8.52e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun6g01270 SRF-TF 5.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01270 - - vun:114188525 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01270 6 21861944 21862446 Viun6g01270 6 21861944 21862446 ECH