Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01267 ATGGCCAGAAAGAAGGTCGACCTTACTTTCATAACCAAAACCTCAAAGAGGAAGGCAACCTTCAAGAAAAGGAAAAATGGTTTGATCAAAAAGATCGGTGAAATCAGCATCCTGTGTGGGATTCAAGCATGTGCTATAATCTACTCACCAGATGAACCTGATCAGCCAGAGGTTTGGCCCTCTGAGGAGGGAGTGGAAAGTGCTATCACCAGGTTCAGGAGTGTTTCTGAACTGGAGCAAAGCAAGAAAATGTTCTGTCAGGAAAGCTTCTTGAGGCAAAGAATCGTGAAGGTTCAAGAACAGTTGAAGAAGGTGAGGAACGAGAACAGGAAGAAGGAGATCAACCATCTCATTTCTCAGTACCTCACTGTTGGGAACAAACTTGAGAGTGCCAACATCATTGATCTCAACGATATCTCGTTCTTGGCTGATCAATGCTTGGAGGATATCACCAAGAAAATCGCTGCTCGCAAAGCCCAGATGGGGACACCAGTTACTGAAAACAATGGAGGACAAACTGTGATTCGTCATGGAGAACCAGCACGTGTGAATCATCATGTGCAAGTTCAAGGGCCTTACACTACTGATGTTGAGGCCATGCAGAATCTGAATTGGTCTGCTGAAATCATCAATGGTGGTGCTGCCAATGAGATGTTAGCATTGGACGATGTTAATGTCCCCAGTGGTTGGCTTAACCAATACATCCCTTGA 711 0.4487 MARKKVDLTFITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYSPDEPDQPEVWPSEEGVESAITRFRSVSELEQSKKMFCQESFLRQRIVKVQEQLKKVRNENRKKEINHLISQYLTVGNKLESANIIDLNDISFLADQCLEDITKKIAARKAQMGTPVTENNGGQTVIRHGEPARVNHHVQVQGPYTTDVEAMQNLNWSAEIINGGAANEMLALDDVNVPSGWLNQYIP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01267 236 PANTHER MADS BOX PROTEIN 3 127 - -
Viun6g01267 236 FunFam Agamous-like MADS-box protein AGL80 13 99 - -
Viun6g01267 236 Coils Coil 88 115 - -
Viun6g01267 236 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Viun6g01267 236 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Viun6g01267 236 Gene3D - 14 133 IPR036879 GO:0003677|GO:0046983
Viun6g01267 236 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Viun6g01267 236 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun6g01267 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Viun6g01267 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g01267 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01267 Viun-Chr6 21830477 21831519 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01267 1 207 Type I MADS-box Gene Family AT5G48670 41.546 1.93e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun6g01267 SRF-TF 3.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01267 - - vra:106752448 422.935