Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01264 ATGGCCAGAAAGAAGTTGGATCTGACATACATCACCAATGACTCAAAGAGGAAGACAACGTTAAAGAAAAGAAAACATGGTTTGATCAAGAAAATGAATGAAATTAGCACCCTCTGTGGGATTGAAGCATGTGCCATAATCTATTCTCCAAATGATCCTCAGCCAGAGGTTTGGCCATCTGAGCCAAAAGTTCAAAGGGTACTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAATGCAGAAAGATGTTGAATCAGGAGAGCTTGTTGAAACAAATAATCATCAAAGGCCAACAACAGTTAATAAGACAAAGGAATGAGAACAGAAAGAAAGAAATCACTCATCTTATGTTTCAGTACTTGAGTGTCGGGAAGGTTTTTGACAATCCTAGTTTGATAAATTTAAATGATCTCTCATGGTTGATTGATCAGAACCTGAATGAAATAAAAAAGAATATGACTATGATCCAAATCCAAGAACGGGCACCAGTGACTAAAAATGGAGAACATGGATACATGCATCATGTTCACGGGCTAGAGAACACCATAGACACCATTCAGAACCAACATTGA 573 0.3787 MARKKLDLTYITNDSKRKTTLKKRKHGLIKKMNEISTLCGIEACAIIYSPNDPQPEVWPSEPKVQRVLSKFMEMSEQKQCRKMLNQESLLKQIIIKGQQQLIRQRNENRKKEITHLMFQYLSVGKVFDNPSLINLNDLSWLIDQNLNEIKKNMTMIQIQERAPVTKNGEHGYMHHVHGLENTIDTIQNQH 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01264 190 Gene3D - 13 117 IPR036879 GO:0003677|GO:0046983
Viun6g01264 190 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun6g01264 190 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Viun6g01264 190 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun6g01264 190 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun6g01264 190 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun6g01264 190 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Viun6g01264 190 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Viun6g01264 190 PANTHER MADS BOX PROTEIN 3 154 - -
Viun6g01264 190 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun6g01264 190 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01264 Viun-Chr6 21805128 21806432 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01264 1 171 Type I MADS-box Gene Family AT5G48670 46.591 1.72e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun6g01264 SRF-TF 5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01264 - - gmx:100797590 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01264 6 21805128 21806432 Viun6g01264 6 21805128 21806432 ECH