Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01262 ATGGCACACAAGCAACTTTTTTCCATGGCTCTTCTCACTCTCATTGCTCTTCTCTTTGTTGACATCAATATCCAAGGTGTCACTGCTGACTATGGTGGTTGGCAGGGTGGTCATGCCACTTTCTATGGTGGGGGTGATGCTTCTGGCACAATGGGTGGAGCATGTGGGTATGGAAATCTGTATAGCCAGGGTTATGGAACAGACACTGTGGCTCTAAGCACGGCTTTGTTCAACAATGGCTTAAGCTGTGGATCTTGCTACGAAATGAGATGTGATGATGACCCAAGATGGTGCAAACCTGGCTCTATAATCGTCACTGCTACTAACTTCTGCCCCCCAAATCCATCTTTGCCAAACAACAATGGTGGTTGGTGCAACCCACCTTTGCAACACTTTGATATGGCTGAACCTGCCTTCCTTCAAATTGCAGAATATAGAGCTGGAATTGTCCCAGTGGCCTTCAGAAGGGTTCCTTGTGTGAAGAAGGGAGGAATAAGGTTCACTATCAATGGTCACTCTTACTTCAACCTAGTTTTGATCACCAATGTGGGTGGTGCTGGGGATGTGCATTCAGTGTCCATCAAAGGGTCAAAAACTGGGTGGCAAGCCATGTCAAGAAATTGGGGCCAAAACTGGCAAAGCAACTCCTACCTCAATGGACAAGCCCTTTCTTTTCAAGTCACAACCAGTGATGGCAGAACTGTGGCAAGCTACAATGTGGCACCAGGCAATTGGCAATTTGGCCAAACCTTCCAAGGAGGCCAATTCTAG 771 0.4721 MAHKQLFSMALLTLIALLFVDINIQGVTADYGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTDTVALSTALFNNGLSCGSCYEMRCDDDPRWCKPGSIIVTATNFCPPNPSLPNNNGGWCNPPLQHFDMAEPAFLQIAEYRAGIVPVAFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQALSFQVTTSDGRTVASYNVAPGNWQFGQTFQGGQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01262 256 PANTHER EXPANSIN-A15 12 256 IPR002963 GO:0009664
Viun6g01262 256 CDD DPBB_EXPA_N 33 159 - -
Viun6g01262 256 FunFam Expansin 22 160 - -
Viun6g01262 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 164 IPR007112 -
Viun6g01262 256 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Viun6g01262 256 FunFam Expansin 164 256 - -
Viun6g01262 256 Pfam Lytic transglycolase 69 153 IPR009009 -
Viun6g01262 256 Gene3D - 164 256 IPR036749 -
Viun6g01262 256 SMART dpbb_1 69 154 IPR007112 -
Viun6g01262 256 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 239 255 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Viun6g01262 256 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Viun6g01262 256 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Viun6g01262 256 Gene3D - 20 159 IPR036908 -
Viun6g01262 256 SUPERFAMILY Barwin-like endoglucanases 33 182 IPR036908 -
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Viun6g01262 256 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Viun6g01262 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01262 Viun-Chr6 21787221 21789842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01262 1 256 Expansin Gene Family AT2G40610 77.821 2.39e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01262 - K20628 gmx:100499976 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01262 6 21787221 21789842 Viun6g01262 6 21787221 21789842 ECH
Viun6g01262 6 21787221 21789842 Viun7g01044 7 10963710 10966373 ECH