Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01260 ATGTATTCCAATAAAGGGTATAGAGATGATCGCAAAGCTGAGCCTCGTTACATTGAAACCGACCCAAATGGTAGATATGCTCGGGTTGGAGATATCTTAGGAAAGGGGGCAATGAAGACAGTGTATAAAGCAATTGATGAGGTTCTTGGAACAGAGGTTGCATGGAGTCAGGTCAAACTCAATGATGCATTTCGCAAACCAGAGGACTTGGAGAGGCTTTATTTAGAGGTTCATCTCCTCAGCACCCTCAAACACCAATCCATCATGAGATTCTACACCTCTTGGATTGATGTCAACAATAAGACCTTCAACTTCATTACAGAAATGTTTACTTCAGGGACTCTAAGAGAATACAGGAAGAAATATAAGCACATAGGTCTGAGAGCAATAAAGAATTGGGCTCGGCAAATCTTACAGGGTCTTGTTTATCTGCATGAACATGATCCTCCAGTAATTCATAGGGACCTCAAATGTGATAATATATTTGTCAATGGCCATCTTGGACAAGTGAAAATTGGTGACCTGGGTCTAGCAGCAATTCTCCATGGTTCCCAACCAGCTCACAGTGTTATAGGCACTCCCGAGTTCATGGCACCAGAATTGTATGAGGAAGAATACAATGAACTTGTTGATGTGTACTCATTTGGCATGTGTGTTTTGGAAATGCTTACATCTGATTATCCATACAGTGAATGTACTAACCCTGCACAGATATACAAAAAAGTGACATCAGGGAAGCTACCAGCAGCATTTTTCAGGATTGAAGACACAGAAGCACAAAAGTTTATTGGCAAATGTCTAATAGCTGCAGCAGAAAGACCATCGGCAAAAGAATTGTTGCATGATCCATTTCTTTTGTCTAATGATGAATCATCCATGGCAAAGATTGGAATTCCGAAGCCGTTTCTAAATTACAGCGAAATGGAAAAACTTCAACTGAGTGATGATTTACCTATGACTAAAATGTCAATAACTGGGAAGTTGAATCCAGAAGATGGCACTATCTTTCTCAAAGTGAAAATTTCTGAGAAGGATGGTTCTTGTAGGAATGTGTACTTTCCCTTTGACATTTACACAGACACCCCTGTTGATGTTGCAATAGAGATGGTGAAAGAGTTGGAAATCACAGATTTGAAGCCTTCTGATATTGCACGTATGATTGAAGGAGAGATATCTGTGCTGCTTCCGAATTGGAGGAATAGTAACTGTCCAGATACCTGCCATACATTCAGTTATAATGATGACAAGGACAATGAAGATCCTCATCGTCTTTTCCGCTCTATTTCTTCTTGTTCATCATCCCTAGAATCAACACTAGGCTCAGCCAGCAGAGTTGATGACTTATTGAATGGATATCATTGGCTCCATGTATTTTTTGCAGGTGATGTAGTTGATGATGGAAGTTCAATATGCTCTTTGCATGGAACATGTTCCAACTCAAACTTGTGTTCAATGGATGAGGATGAGGAACATTATAAGAGTTCTACAAGAAAAGAGAAAGAGCTCATGATAAAGAGTCACATGTGTACTAGATTTTCCCCTAATGAAGACCACAAAATTGTGGCAGGACCACAAACAGCTTGTAGTGGCAAAAGTAACAGGATGATAGACAATCGCAGACTAACTAGGAACAAGTCATTAATTGATACCAGAAGCCAGCTACTGCATATATCATTGGTTGAAGAGATAAACAAAAGAAGATTCAAGACAGTTGGAGCTGTGGAAAATATTGGATTTGTGACTCCTTATCAGGTTACAAACAAATTTTCAAATCCAGCATCTGCTGCTTTCGATGTCAACTCTTCAAGTACAAAGGGAAAAAACTTGAGAGACAAAAAAATTTGA 1845 0.3935 MYSNKGYRDDRKAEPRYIETDPNGRYARVGDILGKGAMKTVYKAIDEVLGTEVAWSQVKLNDAFRKPEDLERLYLEVHLLSTLKHQSIMRFYTSWIDVNNKTFNFITEMFTSGTLREYRKKYKHIGLRAIKNWARQILQGLVYLHEHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILHGSQPAHSVIGTPEFMAPELYEEEYNELVDVYSFGMCVLEMLTSDYPYSECTNPAQIYKKVTSGKLPAAFFRIEDTEAQKFIGKCLIAAAERPSAKELLHDPFLLSNDESSMAKIGIPKPFLNYSEMEKLQLSDDLPMTKMSITGKLNPEDGTIFLKVKISEKDGSCRNVYFPFDIYTDTPVDVAIEMVKELEITDLKPSDIARMIEGEISVLLPNWRNSNCPDTCHTFSYNDDKDNEDPHRLFRSISSCSSSLESTLGSASRVDDLLNGYHWLHVFFAGDVVDDGSSICSLHGTCSNSNLCSMDEDEEHYKSSTRKEKELMIKSHMCTRFSPNEDHKIVAGPQTACSGKSNRMIDNRRLTRNKSLIDTRSQLLHISLVEEINKRRFKTVGAVENIGFVTPYQVTNKFSNPASAAFDVNSSSTKGKNLRDKKI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01260 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Viun6g01260 614 Gene3D Transferase(Phosphotransferase) domain 1 110 292 - -
Viun6g01260 614 SUPERFAMILY Protein kinase-like (PK-like) 29 318 IPR011009 -
Viun6g01260 614 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Viun6g01260 614 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 12 484 - -
Viun6g01260 614 Pfam Protein kinase domain 30 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01260 614 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Viun6g01260 614 SMART serkin_6 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01260 614 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01260 614 FunFam probable serine/threonine-protein kinase WNK9 110 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01260 Viun-Chr6 21771870 21777207 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01260 17 588 MAP Kinase Kinase Kinase AT5G58350 58.003 0.0 622
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Viun6g01260 Pkinase 2.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01260 K08867 - gmx:100778102 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01260 6 21771870 21777207 Viun6g01260 6 21771870 21777207 ECH