Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01249 ATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGTATTCTCTCCCTGATGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTACAGCACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACTAAAATCGCTGATAGGCTGGGCCTCATGTCTAATCAAGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTAAAGGAAAATGCTGAACAATCTGAAAAGACTGATGAGGTGGAATACATTGATCAAATGATTGCTGTCATAACACGTATGCATGAGCGTCTCGTTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCAGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGACAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGTACAACCAGGGAGTCACCTGTTTTTTCTCACCCCAGGAACAACCAGCCGTCCTCACCTGAGGCAGCGCGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACATCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATATATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCACTGTGGATTCAGCTAGCCAGCCATCAATGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCGGTTATCAACAAGTCCAGGCCACAGTAGAGATGCTTCAGGTGAATTAAATGCAGGGCCAGAAACTGCTGGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGACACAAGGCGAAGTCAAGGCATATGGAGGCGGCCACCAGATAGGCTTGTTCCTAGGATAGCATCTCCTGCTATTGAAACAAGAGCTGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCCTGAGGAGCTCTGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGTGCCATTAACTTATTAGTTGGTTTACTTAGATCAGCTGATATAGCAATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAACGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAAACTGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGAATTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTCTTGGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAAGAGAATGCAGCCGCAGCTCTTCTACATCTTTGTATACATAGTACCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2238 0.441 MQVEPLISRIRTSGLNIFQQLKVSQYSLPDELSSEDLQQCSHKLKLLGHEETSSVIKEAITAQLEYAGPSPEVLTKIADRLGLMSNQDVLIEAVALERLKENAEQSEKTDEVEYIDQMIAVITRMHERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNPPSVLHGYMESGTTRESPVFSHPRNNQPSSPEAARSRSFSSPGNNITSVGIQLEETSSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNAPRLSTSPGHSRDASGELNAGPETAGTTVMPSTHREAESPARLLDTRRSQGIWRRPPDRLVPRIASPAIETRADLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVGLLRSADIAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVELLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCIHSTKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01249 745 Pfam Armadillo/beta-catenin-like repeat 493 530 IPR000225 GO:0005515
Viun6g01249 745 Pfam Armadillo/beta-catenin-like repeat 532 571 IPR000225 GO:0005515
Viun6g01249 745 Pfam Armadillo/beta-catenin-like repeat 575 612 IPR000225 GO:0005515
Viun6g01249 745 SUPERFAMILY ARM repeat 462 734 IPR016024 -
Viun6g01249 745 Gene3D - 442 740 IPR011989 -
Viun6g01249 745 PANTHER U BOX DOMAIN-CONTAINING 10 734 - -
Viun6g01249 745 MobiDBLite consensus disorder prediction 241 274 - -
Viun6g01249 745 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 222 IPR013083 -
Viun6g01249 745 MobiDBLite consensus disorder prediction 221 274 - -
Viun6g01249 745 CDD RING-Ubox_PUB 144 196 IPR045210 -
Viun6g01249 745 Pfam U-box domain 143 213 IPR003613 GO:0004842|GO:0016567
Viun6g01249 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 625 666 IPR000225 GO:0005515
Viun6g01249 745 MobiDBLite consensus disorder prediction 319 393 - -
Viun6g01249 745 SMART arm_5 654 694 IPR000225 GO:0005515
Viun6g01249 745 SMART arm_5 573 613 IPR000225 GO:0005515
Viun6g01249 745 SMART arm_5 532 572 IPR000225 GO:0005515
Viun6g01249 745 SMART arm_5 491 531 IPR000225 GO:0005515
Viun6g01249 745 SMART arm_5 445 489 IPR000225 GO:0005515
Viun6g01249 745 SMART arm_5 614 653 IPR000225 GO:0005515
Viun6g01249 745 Coils Coil 86 106 - -
Viun6g01249 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 584 626 IPR000225 GO:0005515
Viun6g01249 745 ProSiteProfiles U-box domain profile. 142 216 IPR003613 GO:0004842|GO:0016567
Viun6g01249 745 SMART Ubox_2 146 209 IPR003613 GO:0004842|GO:0016567
Viun6g01249 745 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 544 IPR000225 GO:0005515
Viun6g01249 745 MobiDBLite consensus disorder prediction 315 428 - -
Viun6g01249 745 FunFam RING-type E3 ubiquitin transferase 142 217 - -
Viun6g01249 745 SUPERFAMILY RING/U-box 133 220 - -
Viun6g01249 745 FunFam RING-type E3 ubiquitin transferase 445 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01249 Viun-Chr6 21698049 21701234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01249 103 745 U-box Gene Family AT2G23140 62.250 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01249 - - gmx:100811250 1228.39