Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01248 ATGGAGATATCATTGTTAAAAATGATAGTAAATGGCATATCCTCGTTTTTGCATTTATCAATTTCTGGAAACAAGAGCTCTGAACCTGTCTCAAAGTATTACCAGAAGGCAGAGGAGATACTTAAGCTGTTGAAGCCAATCATTGATGAGATTGTTAATTCTGAGTTAGCTTCTGATGAAATGCTTAATAAGATATTGGAAGAAATTGGTCTTGCTGTTAATGAATTAAAGGAGCATGTCGAGAACTGGCACCTATTGTCTAGCAAAGTATACTTTGTTATGCAAGTTGAACCCCTGATATCAAGAATTCGCACTTCAGGGCTCAATATTTTCCAGCAGCTGAAGGTTTCTCAGTATTCTCTCCCTGATGAATTGAGTTCTGAAGATTTACAGCAATGTTCACATAAACTTAAGCTTTTGGGGCATGAAGAAACCTCATCAGTTATTAAGGAAGCTATTACAGCACAACTGGAATATGCAGGACCCAGTCCAGAGGTCCTGACTAAAATCGCTGATAGGCTGGGCCTCATGTCTAATCAAGATGTTCTTATTGAGGCTGTGGCCCTTGAAAGGTTAAAGGAAAATGCTGAACAATCTGAAAAGACTGATGAGGTGGAATACATTGATCAAATGATTGCTGTCATAACACGTATGCATGAGCGTCTCGTTATGCTTAAGCAAGCTCAGAGTAGCAGCCCAGTTCCAATACCAGCTGATTTTTGTTGTCCACTTTCTTTGGAGTTGATGACTGATCCTGTGATTGTGGCATCAGGGCAAACATATGAGCGAGCTTTCATCAAGAACTGGATTGATCTTGGGCTTACTGTTTGTCCAAAGACACGACAAACTCTGGCTCATACCAACCTAATACCTAATTATACTGTAAAAGCTCTAATTGCAAATTGGTGTGAATCTAACAATGTGCAACTAGTTGATCCCACAAAATCCACAAATTTAAATCCACCATCCGTCCTTCATGGGTATATGGAATCCGGTACAACCAGGGAGTCACCTGTTTTTTCTCACCCCAGGAACAACCAGCCGTCCTCACCTGAGGCAGCGCGTTCTCGTTCTTTTAGTTCACCAGGTAATAACATAACTTCTGTTGGCATTCAGCTAGAGGAAACATCATCACCTTTGCATCCCCGTTCAACTTCAGAAGGTTCCTTAAGTGGTATAATTAATGGACAATATATGGATCTTGCAAGAATATCTCCCGCTGGTTTGGATGACAGGTCTGCTAGCTCAGATGAAAGCACTGTGGATTCAGCTAGCCAGCCATCAATGTCACCATCTAGAAGGGAATCATCCAGTGCCTTTAGCTCTGAACAATCTCAAACCCATATTAGAGCTGTTTCTGACTCCAGTGCACTTTCTACTGCAAACTTTCCTCAAGAAACCCAAGATGATGACAACAATGCTCCTCGGTTATCAACAAGTCCAGGCCACAGTAGAGATGCTTCAGGTGAATTAAATGCAGGGCCAGAAACTGCTGGTACTACTGTCATGCCATCAACACATAGAGAAGCTGAGTCCCCAGCCCGATTGTTAGACACAAGGCGAAGTCAAGGCATATGGAGGCGGCCACCAGATAGGCTTGTTCCTAGGATAGCATCTCCTGCTATTGAAACAAGAGCTGATCTTTCAGGTATTGAAGCCCAGGTCCGGAATTTGGTTGAGGGCCTGAGGAGCTCTGATCTTGATACTCAGAAAGAGGCAACAGCAGAACTCCGCCTTCTTGCAAAGCACAATATGGATAATAGAATTGCGATTGCAAACTGTGGTGCCATTAACTTATTAGTTGGTTTACTTAGATCAGCTGATATAGCAATCCAAGAAAATGCTGTTACCGCACTTCTAAACTTATCAATCAATGATAACAACAAAACTGCAATTGCAAACGCTGGTGCAATTGAACCTCTGATTCACGTGCTTGAAACTGGGAGCCCAGAAGCCAAGGAGAATTCTGCTGCCACTCTTTTCAGCTTATCAGTGATTGAGGAAAACAAGATTTTCATAGGGAGGTCTGGGGCAATTAGACCACTGGTAGAATTATTGGGGAATGGAACCCCTAGGGGAAAGAAAGATGCTGCCACTGCTTTGTTTAATTTGTCAATATTTCATGAAAACAAGAATCGGATTGTGCAAGCTGGTGCTGTGAGGCACCTTGTGGAGTTAATGGACCCAGCAGCTGGAATGGTTGATAAGGCAGTGGCTGTCTTGGCAAATCTTGCCACAATTCCAGAAGGAAGAAATGCAATTGGTGAAGAAGGTGGGATTCCTGTTCTGGTTGAGGTTGTTGAGTTGGGTTCTGCGAGAGGAAAAGAGAATGCAGCCGCAGCTCTTCTACATCTTTGTATACATAGTACCAAATTTTTAGGCAAGGTGCTTCAACAAGGAGCTGTCCCTCCATTAGTAGCTTTATCACAGTCAGGCACCCCAAGGGCCAAAGAAAAGGCCCAGGCTCTCCTCAATCAATTTAGAAGTCAAAGACATGGGAATGCTGGGAGGGGCTGA 2517 0.4307 MEISLLKMIVNGISSFLHLSISGNKSSEPVSKYYQKAEEILKLLKPIIDEIVNSELASDEMLNKILEEIGLAVNELKEHVENWHLLSSKVYFVMQVEPLISRIRTSGLNIFQQLKVSQYSLPDELSSEDLQQCSHKLKLLGHEETSSVIKEAITAQLEYAGPSPEVLTKIADRLGLMSNQDVLIEAVALERLKENAEQSEKTDEVEYIDQMIAVITRMHERLVMLKQAQSSSPVPIPADFCCPLSLELMTDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVQLVDPTKSTNLNPPSVLHGYMESGTTRESPVFSHPRNNQPSSPEAARSRSFSSPGNNITSVGIQLEETSSPLHPRSTSEGSLSGIINGQYMDLARISPAGLDDRSASSDESTVDSASQPSMSPSRRESSSAFSSEQSQTHIRAVSDSSALSTANFPQETQDDDNNAPRLSTSPGHSRDASGELNAGPETAGTTVMPSTHREAESPARLLDTRRSQGIWRRPPDRLVPRIASPAIETRADLSGIEAQVRNLVEGLRSSDLDTQKEATAELRLLAKHNMDNRIAIANCGAINLLVGLLRSADIAIQENAVTALLNLSINDNNKTAIANAGAIEPLIHVLETGSPEAKENSAATLFSLSVIEENKIFIGRSGAIRPLVELLGNGTPRGKKDAATALFNLSIFHENKNRIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRNAIGEEGGIPVLVEVVELGSARGKENAAAALLHLCIHSTKFLGKVLQQGAVPPLVALSQSGTPRAKEKAQALLNQFRSQRHGNAGRG 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01248 838 PANTHER U BOX DOMAIN-CONTAINING 29 827 - -
Viun6g01248 838 MobiDBLite consensus disorder prediction 334 367 - -
Viun6g01248 838 FunFam RING-type E3 ubiquitin transferase 538 833 - -
Viun6g01248 838 SUPERFAMILY ARM repeat 555 827 IPR016024 -
Viun6g01248 838 Pfam Armadillo/beta-catenin-like repeat 625 664 IPR000225 GO:0005515
Viun6g01248 838 Pfam Armadillo/beta-catenin-like repeat 668 705 IPR000225 GO:0005515
Viun6g01248 838 Pfam Armadillo/beta-catenin-like repeat 586 623 IPR000225 GO:0005515
Viun6g01248 838 MobiDBLite consensus disorder prediction 408 521 - -
Viun6g01248 838 SMART arm_5 538 582 IPR000225 GO:0005515
Viun6g01248 838 SMART arm_5 707 746 IPR000225 GO:0005515
Viun6g01248 838 SMART arm_5 666 706 IPR000225 GO:0005515
Viun6g01248 838 SMART arm_5 584 624 IPR000225 GO:0005515
Viun6g01248 838 SMART arm_5 625 665 IPR000225 GO:0005515
Viun6g01248 838 SMART arm_5 747 787 IPR000225 GO:0005515
Viun6g01248 838 FunFam RING-type E3 ubiquitin transferase 235 310 - -
Viun6g01248 838 Pfam U-box domain 236 306 IPR003613 GO:0004842|GO:0016567
Viun6g01248 838 Coils Coil 179 199 - -
Viun6g01248 838 ProSiteProfiles U-box domain profile. 235 309 IPR003613 GO:0004842|GO:0016567
Viun6g01248 838 CDD RING-Ubox_PUB 237 289 IPR045210 -
Viun6g01248 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 718 759 IPR000225 GO:0005515
Viun6g01248 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 595 637 IPR000225 GO:0005515
Viun6g01248 838 SUPERFAMILY RING/U-box 226 313 - -
Viun6g01248 838 Gene3D - 535 833 IPR011989 -
Viun6g01248 838 MobiDBLite consensus disorder prediction 412 486 - -
Viun6g01248 838 SMART Ubox_2 239 302 IPR003613 GO:0004842|GO:0016567
Viun6g01248 838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 315 IPR013083 -
Viun6g01248 838 MobiDBLite consensus disorder prediction 314 367 - -
Viun6g01248 838 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 677 719 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01248 Viun-Chr6 21698049 21707091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01248 196 838 U-box Gene Family AT2G23140 62.250 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01248 - - gmx:100811250 1388.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01248 6 21698049 21707091 Viun8g01986 8 30393087 30398410 PCT