Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01218 ATGACCACTTCTTTCTCTGACCTTCTCTCTTCTCCCACCGACCACAACCTAAGAGGCTCCGAAAGACCTCAAGAGTTGTCGGATCAAACAGCTTCTGGTGTGCCAAAATTCAAATCCACACCTCCTCCATCTCTCCCTATCTCTCACCCTCAAACTCATCCTCTTCCTCCCATTTCTCCTTCTTACTTTAACATCCCTCATGGGCTAAGCCTCGCTGAGCTTCTTGACTCCCCAGTTCTCCTTCACTCTTCTAACGTTTTGCCATCTCCAACCACTGGATCATATGCTGGTCAAGGCTTCAATTGGAAGAGCAGTTATGGGGAAAGCCAGCACCATGTCAAAGAAGAAGACAAAAGCTTCTCAAGTTTCTCTTTCCAAACACAGACACAGATTCCTCTTACATCTTCAACTGGATTTCAATCTTCAAACGGGTGGAGTTTCCCGGAAACTGCTAAACAAGATGGATTCTCTTCGAGAATGAACATGAGTATGGTGAAAACTGAAGCCTCTTCAGCGATGCAGGGATTCAACTCAGAAAATAATAACCACCACAGTGCTGGTCTTCTTCAATCAGATTATAACAGTTACCAGCCACAGGTTCAGACCTTAAGCAGAAGATCAGATGATGGGTACAATTGGAGGAAATATGGGCAAAAGCAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTACAAGTGCACATACCCCAGTTGTCCAACAAAGAAAAAGGTTGAGAGATCCTTAGATGGACAAATTACTGAGATTGTTTACAAAGGTAGTCATAATCATCCCAAGCCTCAGGCTAACAAGAGGAACTCATCATCACTTGCAATAAACAGTGTCAACAATGAAATAACTCATCACATGGATTCGGTTGCAACTCCTGAAAACTCGTCAATATCAATGGAAGATGACGACTTTGGTCAGAGCAAATCAGGAGGAGATGAGTTTGATAACGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGAGGGTATATCAGCTGCTGGAAGTAGAACAGTGAGAGAACCCAGAGTTGTGGTTCAGACAACCAGTGACATCGATATTCTAGATGATGGATACAGATGGAGGAAATATGGGCAGAAAGTAGTCAAGGGAAACCCAAATCCAAGGAGTTACTACAAGTGCACATTCCCAGGATGTCCAGTGAGGAAGCACGTAGAGAGAGCCTCACATGACCTAAGAGCAGTGATCACAACCTATGAGGGAAAGCACAACCATGATGTTCCGGCAGCACGTGGCAGTGGCAGCAGCTCCATCAGCAGAGCAGTGCCTATAAACACCACCACCACAAACAGCACCACTAGTGCAGCAACTTCCATATACATTAACAATTCTCACCCCAATATGTCAGGAAGTTTTGGATTCTCAGGGTTTGGGAATCCATTAATGGGGTCTTACATGAACCAACAATCAGACAATGTGTTCACTTCTAGAGCCAAGGAGGAGCCAGGAGATGACTCGTTTCTTGACTCTTTGCTATGTTAA 1518 0.4414 MTTSFSDLLSSPTDHNLRGSERPQELSDQTASGVPKFKSTPPPSLPISHPQTHPLPPISPSYFNIPHGLSLAELLDSPVLLHSSNVLPSPTTGSYAGQGFNWKSSYGESQHHVKEEDKSFSSFSFQTQTQIPLTSSTGFQSSNGWSFPETAKQDGFSSRMNMSMVKTEASSAMQGFNSENNNHHSAGLLQSDYNSYQPQVQTLSRRSDDGYNWRKYGQKQVKGSENPRSYYKCTYPSCPTKKKVERSLDGQITEIVYKGSHNHPKPQANKRNSSSLAINSVNNEITHHMDSVATPENSSISMEDDDFGQSKSGGDEFDNDEPDAKRWRIEGENEGISAAGSRTVREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTFPGCPVRKHVERASHDLRAVITTYEGKHNHDVPAARGSGSSSISRAVPINTTTTNSTTSAATSIYINNSHPNMSGSFGFSGFGNPLMGSYMNQQSDNVFTSRAKEEPGDDSFLDSLLC 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01218 505 MobiDBLite consensus disorder prediction 1 37 - -
Viun6g01218 505 FunFam WRKY transcription factor 196 267 - -
Viun6g01218 505 ProSiteProfiles WRKY domain profile. 355 420 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 SMART WRKY_cls 360 419 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 SMART WRKY_cls 207 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 ProSiteProfiles WRKY domain profile. 208 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 Gene3D WRKY domain 347 413 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 MobiDBLite consensus disorder prediction 308 322 - -
Viun6g01218 505 MobiDBLite consensus disorder prediction 1 53 - -
Viun6g01218 505 MobiDBLite consensus disorder prediction 293 322 - -
Viun6g01218 505 FunFam WRKY transcription factor 33 347 413 - -
Viun6g01218 505 MobiDBLite consensus disorder prediction 39 53 - -
Viun6g01218 505 Gene3D WRKY domain 193 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 445 IPR044810 GO:0003700
Viun6g01218 505 SUPERFAMILY WRKY DNA-binding domain 206 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 SUPERFAMILY WRKY DNA-binding domain 352 420 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 Pfam WRKY DNA -binding domain 361 417 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun6g01218 505 Pfam WRKY DNA -binding domain 208 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01218 Viun-Chr6 21434952 21437767 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01218 1 504 WRKY Transcription Factor Family AT2G38470 44.803 1.24e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun6g01218 WRKY 2.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01218 K13424 - gmx:100127421 783.097