Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01201 ATGGGGGGTACTTCACCTTGTGCTTCTTGCAAGTTGCTGAGACGTCGTTGCTCCAAGGAATGCATCTTTGCTCCTTATTTTCCTTCTGATGACCCTCGCAAGTTTGCCATTGTTCATAAGGTTTTTGGTGCTAGCAATGTCAGCAAAATGTTGCAGGAACTTCCTGTTCATCAAAGAGCAGATGCTGTGAGCAGTTTAGTTTATGAGGCAAATGCAAGAGTGAGAGATCCAGTTTATGGATGTGTTGGAGCCATATCATACCTACAGAACCAAGTTTCACAGCTTCAAATGCAGCTTGCAGTGGCTCAAGCAGAGATTCTATGCGTTCAGATGCAGCAACAAGAACCTACCATAACCACACAAGTAGATCAAGATCACAAATCACTGCTCCTATCTGTAAACAATAACTTTGAACCTCTTCCTCACTATCTTAACTTTCCCTCTTCTTCTTCCTCCTCTTCAAATGTGTTCCAAGACCCTCATGAGCCTCTCAAGAGAGAGTCTTTTTGGACTTGA 516 0.4322 MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNVSKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCVQMQQQEPTITTQVDQDHKSLLLSVNNNFEPLPHYLNFPSSSSSSSNVFQDPHEPLKRESFWT 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01201 171 Coils Coil 85 105 - -
Viun6g01201 171 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Viun6g01201 171 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Viun6g01201 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 145 - -
Viun6g01201 171 MobiDBLite consensus disorder prediction 150 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01201 Viun-Chr6 21302806 21303778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01201 3 171 AS2 family AT2G30130 66.316 2.22e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun6g01201 LOB 7.5e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01201 - - gmx:100819419 318.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01201 6 21302806 21303778 Viun6g01201 6 21302806 21303778 ECH