Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01158 ATGCCAACCCAACCTGAGTCACCCAACACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCCCTTCTCCTTGTCATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAGATGGTTCCTTGCTCAGGCACAGGCTCAGGCACACGCCCGCCGTCGACGCCGCCGCCGCCGAACGACGGTCACCGTCTCCGACGTCCTTGGCCCGGCAAGGTTCCACCAGTTCCACAGCTTCAACATAGAAGACCCCTCCCCCCTCTCAACCAAAGGCCTGGATTCTTCCACCATTAGAGCAATTCCTCTCTTCATCTATGAGCACAACAACAAGGCCAAAGAAGATGAAGAACTTGAATGTGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGCTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATCGACATGTGGTTGAGTTCGCACTCTAATTGTCCCATTTGTAGAGCCCCCATTGTAGCAAATGTTGTTGAGAGCGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCTGATGAGACTAGAGAAAGTGAGCACGGCAATGGAGGAGCAAGAACAAGTGTTTCTGTGTCAGAAACTTCTTCCTCGTTTTTTGGATGCTCTTTGGAGAGAATGCTCGGCAAGGTTTTCCCATCGGCAAATTAA 744 0.4946 MPTQPESPNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYARWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHQFHSFNIEDPSPLSTKGLDSSTIRAIPLFIYEHNNKAKEDEELECVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAPIVANVVESDSSQVVSSRDHGGSDFEIVVDAGSDETRESEHGNGGARTSVSVSETSSSFFGCSLERMLGKVFPSAN 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01158 247 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Viun6g01158 247 CDD RING-H2_EL5-like 127 170 - -
Viun6g01158 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 175 IPR013083 -
Viun6g01158 247 FunFam RING-H2 finger protein ATL1 87 175 - -
Viun6g01158 247 SUPERFAMILY RING/U-box 117 176 - -
Viun6g01158 247 Pfam Ring finger domain 127 170 IPR001841 -
Viun6g01158 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 188 - -
Viun6g01158 247 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01158 Viun-Chr6 20993978 20996163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01158 17 218 Rapid Response to Elicitors AT3G16720 35.071 1.38e-31 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01158 - - pvu:PHAVU_006G070000g 393.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01158 6 20993978 20996163 Viun6g01158 6 20993978 20996163 ECH
Viun6g01158 6 20993978 20996163 Viun8g01819 8 29129788 29131104 PCT