Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01154 ATGGTTTCTTCTTGGGTAAGAGGCAAGTGCATAGGCAAGGGCGCGTTTGGCACCATCAGTGTCGCGCTTCGAAAGCTTGAGGCGCAAACGCAAATTTTCGCGGTGAAGTCTGTGGATATTAAAACAGGTCTCCCGGGTCAGCTGGAAGCGTTGGAGAACGAGATTCGGATCCTCCGACGCATGTCCTCGCCGCACGTGGTGACCTTTCTCGGCGAGGACACCACATGCGAGAAGCGGAACCTTCACATGGAGTACATGCCATGTGGCACTCTCGCTGACCTGGACCCCGACGTGGACGAGTATATAGTGAGACAATACACGTGGTGCTTGGTGAGCGCTCTGAAGCACGTGCACGAAAACGGCGTCGTGCACTGCGACGTGAAGGGGAAGAACGTCCTTGTCGGAGACGGAGCCAACGGTCGCAACTGCAAGCTCGCCGACTTCGGCTCGGCGATGGAGTTCGACGGGGAAGGTCTCCCGGCGGCTTCGCCGCGCGGGAGTCCGCTATGGATGGCGCCGGAAGTGATACGCCGGGAGTGTCAGGGTCTGGCGTCGGACGTTTGGTCGTTAGGTTGCACGGTGATCGAGATGATCACCGGAAGACCGCCATGGGAGGGAAACGCCGTGGACGCGCTGAGTCGGATTGGATTCTCCGGCGAGGTGCCGGGGTTTCCGCGCCGGTTATCGGAGCTCGGCCGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAGCCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGGAGCATCCGTTTCTGATACCGTGTGGTGTGATTGTGGAATCGTCGCCTCGGTGCGTTCTCGACCGAGTTGACTCGGAGTTCGCTGGGTTCGACGACGAAGAAGAAGAGGAAGAAGAAGAAATGATAACCGAAAGTGAAAATTCGGCGAGGGATAGAATTGGAAGATTGGCTATGAGCGTAGGGGTAAATTGGGAAGCGCAAGGATGGGTGATGGTGAGGGAATTGGCGGTGGTGGCTGAAAGTTCTGAGGACGTTAGAGAAGGGACGATTTTGCAAAATTTTGAGATTACGAGGGCAGAACGGGGAATTCAGGTAGGGACAAATTCGGAATGTGCAGGTTTGAAAAACGAAATGGTAAAATTGGGAATGTGTAGTTTGGGTGGAAGGCGTTGGTTGACACGGTACAACCGGCGGAGTGAGTGTGAGTGTGGGTGGGAAAATGTTGATAAGAGAAAAAGAATGTTATTGAAAATAAATATTTACAAGTTGTACTTTAAATTATTGAAATCACATTGTTTGTTTTTGAAGTATTTAATGATATACTTATGTTTTGGGTGGATTCGTATTGATGGCATTATGACTAAAGTATGTTAA 1356 0.5243 MVSSWVRGKCIGKGAFGTISVALRKLEAQTQIFAVKSVDIKTGLPGQLEALENEIRILRRMSSPHVVTFLGEDTTCEKRNLHMEYMPCGTLADLDPDVDEYIVRQYTWCLVSALKHVHENGVVHCDVKGKNVLVGDGANGRNCKLADFGSAMEFDGEGLPAASPRGSPLWMAPEVIRRECQGLASDVWSLGCTVIEMITGRPPWEGNAVDALSRIGFSGEVPGFPRRLSELGRDFLEKCLRREPWRRWSCDQLLEHPFLIPCGVIVESSPRCVLDRVDSEFAGFDDEEEEEEEEMITESENSARDRIGRLAMSVGVNWEAQGWVMVRELAVVAESSEDVREGTILQNFEITRAERGIQVGTNSECAGLKNEMVKLGMCSLGGRRWLTRYNRRSECECGWENVDKRKRMLLKINIYKLYFKLLKSHCLFLKYLMIYLCFGWIRIDGIMTKVC 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01154 451 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 313 - -
Viun6g01154 451 SUPERFAMILY Protein kinase-like (PK-like) 3 267 IPR011009 -
Viun6g01154 451 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Viun6g01154 451 CDD STKc_MAPKKK 4 259 - -
Viun6g01154 451 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01154 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Viun6g01154 451 Pfam Protein kinase domain 7 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01154 451 FunFam Serine threonine protein kinase putative 3 311 - -
Viun6g01154 451 Gene3D Transferase(Phosphotransferase) domain 1 1 316 - -
Viun6g01154 451 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01154 Viun-Chr6 20953393 20955056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01154 5 339 MAP Kinase Kinase Kinase AT2G30040 56.268 4.29e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Viun6g01154 Pkinase 7.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01154 - - gmx:100818366 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01154 6 20953393 20955056 Viun6g01154 6 20953393 20955056 ECH
Viun6g01154 6 20953393 20955056 Viun8g01812 8 29066559 29068450 PCT