Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01152 ATGTCTTGTTTCGTGGCAGTTCCTAATTCCCCCGTTTTCTCTCTGTTTAACAACAACACCAACAACAATAACTCTTCTTCCATGGCAGAACCTCTCATGCTTTCTCTTCCCATTCCCTCCCCCACACCCTCTTGCTCCTCTCCACCTTCCTCTCCCCAGTTGAAGCGAAGAAGACCTGCAAAACTCGACATTCCCGTCGCTTCTCTCGCATTCACGCTCTCCACGGCGCCGGCGCCGTCTCCGGCCATGGACGCCGTCGTCGAGGTCGACGGAAGCGGGTTTTCTGTCTTCTGCAGACGAGGAAGGAGGCCCCACATGGAGGACCGTTACTCCGCTGCCGTTGATCTTCGCGGTGAACCCAAGCAGGCTTTCTTCGGCATATTCGATGGGCATGGGGGCACAAAAGCTTCGGAATTCGCTGCACATAACTTAGAGAAGAATGTGATGGATGAGGTGGTTAGAAGAGATGAAAGTGACATTGAGGAGGCAGTGAAACATGGCTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTCATGGTGGCTCTTGCTGTGTGACAGCATTGATATGGAATGGCAACCTTGTCGTGTCTAACGTTGGGGATTGTCGTGCTGTGATTAGCAGAGGAGGGGTAGCAGAAGCCCTCACATCTGATCACAGGCCTTCAAGGGAAGATGAAAGGGACAGAATTGAAACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTGTGGAGGATCCAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGGAACCTGAAACAATGGGTGATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCTGCATGACTTGTTGATCTTAGCTTCAGATGGCTTATGGGAAAAGGTTAGCAATCAGGAAGCAGTGGATATTGCTGGTCCTTTTTGTGTAGGTAACAACAGACAACAACCTTTGCAGGCCTGTAAGAAGCTCGTAGATTTATCTGTGTCGCGAGGTTCTGTGGATGATATAAGTGTTATGATCATCAAGTTGCAAAACTATGTTTGA 1047 0.49 MSCFVAVPNSPVFSLFNNNTNNNNSSSMAEPLMLSLPIPSPTPSCSSPPSSPQLKRRRPAKLDIPVASLAFTLSTAPAPSPAMDAVVEVDGSGFSVFCRRGRRPHMEDRYSAAVDLRGEPKQAFFGIFDGHGGTKASEFAAHNLEKNVMDEVVRRDESDIEEAVKHGYLNTDSEFLKEDLHGGSCCVTALIWNGNLVVSNVGDCRAVISRGGVAEALTSDHRPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPLHDLLILASDGLWEKVSNQEAVDIAGPFCVGNNRQQPLQACKKLVDLSVSRGSVDDISVMIIKLQNYV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01152 348 MobiDBLite consensus disorder prediction 27 58 - -
Viun6g01152 348 CDD PP2Cc 93 344 IPR001932 -
Viun6g01152 348 Gene3D - 93 347 IPR036457 -
Viun6g01152 348 ProSiteProfiles PPM-type phosphatase domain profile. 93 344 IPR001932 -
Viun6g01152 348 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Viun6g01152 348 FunFam probable protein phosphatase 2C 25 86 347 - -
Viun6g01152 348 Pfam Protein phosphatase 2C 94 337 IPR001932 -
Viun6g01152 348 SMART PP2C_4 83 342 IPR001932 -
Viun6g01152 348 PANTHER PROTEIN PHOSPHATASE 2C 53 343 IPR015655 GO:0004722|GO:0006470
Viun6g01152 348 SUPERFAMILY PP2C-like 94 346 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01152 Viun-Chr6 20922054 20924693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01152 1 348 PP2C-type Phosphatase Gene Family AT2G30020 56.423 4.03e-142 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01152 K17506 - gmx:100813073 576.244