Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01149 ATGGCAACGAAAGGTCTTGATAATGTTGGGAGCAGAAAGCGCAAACGACAGACTTCAAGAAAGCTTGAAGTGGATGCAAAAGTGGAGGTGAGGAGTATGGACAATGGGTTTCAAGGATCGTGGCACCCTGGAACAGTTATCATGTGTGAGGATTTGCAACGGCGTGTCAGATATAACAATATTTTGGATAACAACGGGGCGTATAATCTTGAGGAGGTGGTGAATGTTTCAAAAGCTTTGGATGGTGATATTGAATGTGCAGACTGCTATGCACGCGGGTTCATTAGGCCACTGCCTCCTTTGGTTGAGTTTGATAGGGGGGACCTTGTATTTGGTTTATGTGTTGATGTGAACTATAAGGAAGCTTGGTGGGAAGGAGTTATATTTGACCACTGTGATGGAATGGACAAGAGGAATGTGCTTTTCCCTGATTTGGGTGATGAAATGCCGGTTGAAATTCATCAGTTGCGGGTTACTCAGGACTGGGATGAAATTACTGAGGAGTGGACACGACGAGGGAACTGGGTGTTTCTTGATCTGGTGGAGGAGCAGAAGAGGAACTTGTTTGTCACAGTTTCGGCCAAGCAGATTTGGTATGATGTACGCATTAAAAAGGAATTTGAGACGATTAGAGAGTGGACATGTAATTTGAAGTACTTGTGGACCAAGTTGATAAAGGAGGTAGTTAATCACTACTTTTCTCTAACGTTAAAGGAAATTATCTCTGTCCTAGACCTTCCTGGGAGTCTTTTAAGTGAAACACCAGAGCATGCATCTGCTGAAGCCGTGCCTAATGTTGACTTAAGCATGATCGGGCAAAATAACCAAATTGTTGTGCAGAAAGGAACTGTCCCTCCTATTAAAGGGACCTTGTCTGACGTTCAAAATGAAATTAGACCCTGTGGTGATAGTCCTTTTAATGAAAGTAGAGAAGATAGATCCTCAAGTCATTTAGTGTCCTCTTTTTGGAATCCTGTGAAGTTGTCTGGGGTTGAATTATGCCCTGATGCTGTTAGGGAATATCTACTTGCTTCCAAACGTGATGTCAGGGCATTTTGGATGGACAAATTACAAAAGCATCTTGTATGTCTTGGATGGAAAATTGAGTGGTCAAATAGATTAAATGTCAAACGTTACAAGTATATTGCCCCTTATACGCAGGGCCAAAGGTGTTACCTTTCACTCATTGAAGTTTGTAAAGCTATAAAACACGACCCCAACATGAACTCCTTGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGGTTGTCATCTTTCAGATGTGCCTTCTATCCCAGCTGAAAATATTCGATCTATAACGCATCTCCAAAATGATCACACTATAATGCATCCTACAGTTGATTGTCATCTTTCTGATGTGCCTTCTAATCCAGCTGAACATATTCAGAATCCAGATATTCCTCTGGCTGAAAATATTCAGAATCCAGATATTCCTCTAGCTGAACATATTCAGAATCCAGATATTCCTCTAGCTGAAAATATTCAGAATCCAGATATTCCTCTAGCTGAAAATATTCAGAATCCAGATATTCCTCTAGCTGAAAATATTCAGAATCTGGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAAAATATTCTGAATCTAGATATCTTTCCTCCTGCTAAAAATATCCAGAATCTAGATATCATTCCTCCAGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGGAAATATTCAGAATCTAGATATCATTCCTACAGTTGACAATATTCAGAATCTAGATATCTTTTCTCCAGCTAAAAATATTCAGAATCTAGATATCTTTCCTCCTGCTGAGCCATCTTCTCCAGTTGAAGATGAAGTTGAAGAAGTACCTGAGTATTGTCCTCGGGCTGTGGTGCAGTATTATCGCATGTATATACACAACAAGAGCCGAGCTGATAAAAAAAAGTGGATACTAAAGGCAAAGAAGCATCTGTTAGCAGAGGGATGGGTTTTTGACCATCCACCTCCATTTAATAAGAAAAGGGGAATAATATACATGTCTCCACAAAATCGGAAATTCCCAACACTCCATGCAGCATGCAAATTTTGCATTAACGAAACTATTCCTAATTGGAACCTTATATGGCAGGAGGAGATGGATGAAGGTGCTTCTAGTATTAAACCAACTACAAATCAAAAGAAGAAAAACAAGAGGGATTTGAAGGCCAACACACCCAAGGGCCAAAGCAATGGACCTCGACAGGTGCTAAGATCAAATAAGAGGGTGCAAAAGGTGTCTGTCTCTACTCATTTACATCATAAGCCTCTAAATATTCCGTCTTATTTGATAGACAGCAACATCATCTTACCAAGGTCTAAGGTTTATTATAAGGCAAAAGGCAGGAACCGTGCAGTCCGAACTTTTGCTGAGGGGAAAATAACTCATGATGGAATCAAGTGTAACTGTTGCCTTACAATATACAGTTTTGCTGGATTTGAAAAACATGCTACTGGCAGTAGTACATGCAGACCCTCTGCTAATATCTTTTTGGATGATGGAAAGTCACTCTTGGACTGCCAGATACAAATGATGCAAGGTCAAAAGACAAGTGTGGCTAGTGGAAAAGCATTAACTGATCTGTCTCTGGCTGATAATGACTACATTTGTTCAGTTTGTCGCTATGGTGGTGAACTTATTTTATGTGATAAATGTCCATCCTCATTCCATAAGACGTGTCTTGGTTTGGAGGATGTCCCTGAAGGTGACTGGTTTTGTCCATCATGTCGTTGCGGGATTTGTGGCCAAAGGAAAATTGATGGAGATGAGGTTGAACACTTCCTTTCTTGCATACAATGTGAACATAAATATCATGTTAGGTGCCTGAAAAATGGAGCTGCAAATACATCAAGATATAATGGAAACTGGTTCTGTGGAAAAGATTGTGAAAAGATATATGAGGGCCTTCATAAATTATTAGGAGAGCCAATTCCAGTGGCTAACAATCTAACTTGGACTTTGATGAAGTTTATCAACCCTGACAGTTGTGATCTTGGTAATATTGAAAGTGACTTAGTGGCAGAAAGTTACTGCAAACTCAATCTTGCTCTTTTGTTGATGCGTGAATGTTTTGAGCCCCTAAAAGAATCCTTGACTTCCAGAGATCTCGTGGAAGATGCTCTGTTCAGCAGAAGGTCAGAGCTTAACCGAATAAATTTCCAGGGTTTCTACACTGTGCTACTTGAGAGAAATGAAGAACTGGTTAGTGTGGCAACTATTAGGGTCCATGGGAAGAAGGTAGCTGAAATACCTCTTGTTGGCACCAGATTACAATATCGTCGACATGGAATGTGTCGCATTTTAGTAAATGAGCTTGAAAAGAAGCTCATGAAATTGGATGTGGAGAGGCTGGTTTTGCCGGCTGTTCCTAGTGTGCTAGAGACATGGACCGGCTCTTTTGGCTTTGCAAAGATGACTAATTACGAGAGATCTCAGTTTCTGGACTATACTTTTCTAGATTTTGAGGGTACCATTATGTGTCAAAAGTTGTTGATGAATATTGCATCTTCAGATTCAGTTCCGTTAATAGAGTCTGAACGTTGCTGTGTTAACAACAGTAAGTCTGATCCCATATGTGAAGTGCAGCAAGTAGAAGCTATTGACGAAGATGCTTGTGCTGGCAATAATGATCACCATGTTATACCAGCTATTGACCCATTTAGAATGGTGGAGGAACCGGATCAACAGTGTCTGAAAGGAACAACCAGTAGTGTGTGCTCGTTGGATGAACTAGCTGACAAGAATGATGGTCTGTATAAGTTTGTCTACACTCGAAAGAAAATGAGAAAATCATACTAA 3900 0.401 MATKGLDNVGSRKRKRQTSRKLEVDAKVEVRSMDNGFQGSWHPGTVIMCEDLQRRVRYNNILDNNGAYNLEEVVNVSKALDGDIECADCYARGFIRPLPPLVEFDRGDLVFGLCVDVNYKEAWWEGVIFDHCDGMDKRNVLFPDLGDEMPVEIHQLRVTQDWDEITEEWTRRGNWVFLDLVEEQKRNLFVTVSAKQIWYDVRIKKEFETIREWTCNLKYLWTKLIKEVVNHYFSLTLKEIISVLDLPGSLLSETPEHASAEAVPNVDLSMIGQNNQIVVQKGTVPPIKGTLSDVQNEIRPCGDSPFNESREDRSSSHLVSSFWNPVKLSGVELCPDAVREYLLASKRDVRAFWMDKLQKHLVCLGWKIEWSNRLNVKRYKYIAPYTQGQRCYLSLIEVCKAIKHDPNMNSLHLQNDHTIMHPTVGCHLSDVPSIPAENIRSITHLQNDHTIMHPTVDCHLSDVPSNPAEHIQNPDIPLAENIQNPDIPLAEHIQNPDIPLAENIQNPDIPLAENIQNPDIPLAENIQNLDIIPPAENIQNLDIFPPAENILNLDIFPPAKNIQNLDIIPPAENIQNLDIFPPAENIQNLDIFPPAGNIQNLDIIPTVDNIQNLDIFSPAKNIQNLDIFPPAEPSSPVEDEVEEVPEYCPRAVVQYYRMYIHNKSRADKKKWILKAKKHLLAEGWVFDHPPPFNKKRGIIYMSPQNRKFPTLHAACKFCINETIPNWNLIWQEEMDEGASSIKPTTNQKKKNKRDLKANTPKGQSNGPRQVLRSNKRVQKVSVSTHLHHKPLNIPSYLIDSNIILPRSKVYYKAKGRNRAVRTFAEGKITHDGIKCNCCLTIYSFAGFEKHATGSSTCRPSANIFLDDGKSLLDCQIQMMQGQKTSVASGKALTDLSLADNDYICSVCRYGGELILCDKCPSSFHKTCLGLEDVPEGDWFCPSCRCGICGQRKIDGDEVEHFLSCIQCEHKYHVRCLKNGAANTSRYNGNWFCGKDCEKIYEGLHKLLGEPIPVANNLTWTLMKFINPDSCDLGNIESDLVAESYCKLNLALLLMRECFEPLKESLTSRDLVEDALFSRRSELNRINFQGFYTVLLERNEELVSVATIRVHGKKVAEIPLVGTRLQYRRHGMCRILVNELEKKLMKLDVERLVLPAVPSVLETWTGSFGFAKMTNYERSQFLDYTFLDFEGTIMCQKLLMNIASSDSVPLIESERCCVNNSKSDPICEVQQVEAIDEDACAGNNDHHVIPAIDPFRMVEEPDQQCLKGTTSSVCSLDELADKNDGLYKFVYTRKKMRKSY 1299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01149 1299 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01149 1299 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1052 1187 IPR000182 GO:0016747
Viun6g01149 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 895 944 IPR013083 -
Viun6g01149 1299 SMART agenet_At_2 20 88 IPR014002 -
Viun6g01149 1299 SMART agenet_At_2 107 164 IPR014002 -
Viun6g01149 1299 PANTHER PHD FINGER PROTEIN 12 646 1230 IPR042163 GO:0003714|GO:0045892
Viun6g01149 1299 MobiDBLite consensus disorder prediction 738 774 - -
Viun6g01149 1299 CDD NAT_SF 1093 1153 - -
Viun6g01149 1299 MobiDBLite consensus disorder prediction 758 774 - -
Viun6g01149 1299 Pfam PHD-finger 903 945 IPR019787 -
Viun6g01149 1299 SUPERFAMILY FYVE/PHD zinc finger 890 944 IPR011011 -
Viun6g01149 1299 Pfam Tify domain binding domain 826 878 IPR032308 -
Viun6g01149 1299 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1082 1178 IPR016181 -
Viun6g01149 1299 Pfam Agenet domain 26 100 IPR008395 -
Viun6g01149 1299 CDD PHD1_AIRE 904 943 - -
Viun6g01149 1299 Gene3D - 1053 1192 - -
Viun6g01149 1299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 945 999 IPR013083 -
Viun6g01149 1299 CDD Tudor_Agenet_AtDUF_rpt1_3 22 100 - -
Viun6g01149 1299 SMART ring_2 945 995 IPR001841 -
Viun6g01149 1299 SMART ring_2 904 943 IPR001841 -
Viun6g01149 1299 SMART PHD_3 903 944 IPR001965 -
Viun6g01149 1299 SMART PHD_3 945 996 IPR001965 -
Viun6g01149 1299 ProSiteProfiles Zinc finger PHD-type profile. 901 946 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01149 Viun-Chr6 20850588 20860635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01149 31 438 PHD Transcription Factor Family AT5G58610 32.877 2.19e-60 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Viun6g01149 Agenet 5.3e-14 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01149 - - pvu:PHAVU_006G069100g 1920.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01149 6 20850588 20860635 Viun6g01149 6 20850588 20860635 ECH
Viun6g01149 6 20850588 20860635 Viun8g01807 8 28944575 28949867 PCT