Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01147 ATGGCAAAGAAGTTGGATATGATTAAAGATATTGATGGCAGGAGGGAGACCCTGAAACTTGGTGTGAGAGTGCTTGATTTGTGGTATATTCATAACCGCGAATCCAATGTGCACCTTGAAATGATTTTGATTGACCAAATGGGGGACAAGATACATTGCATAGTTAAGAAGGACGAATTTGATATCTGGGATGGTAAGTTGAAGGAAGGCGATACATATATCATGCACAATTTCAAAATTGTGAAAAATGATGGTCAGTATAGAGTGTGTGACCATCCTTTTAAATTGTTGTTTATCGGAGCCACCTCTGTTCGTCCCCAACCCATTGCAAATATACCCAATAGTGTTTACCAGTTTCGGAGCATAAAAGAGGTAGTGGCCAGTAATTTCTCTCCAGATTTGTTGATTGATTTGATCGGTTGGGTAGATAACGTCAAAGCTAAGGCACAATCTAAAAACGTTGTTTTTAGTTTGATGGATCTGAGTGGTGGAGTAGTTTCTTGTACGTTATGGGATGAATATTGCAAAAAATTTTTAGAAAGGTATAATGACAATCCAAATTCTAACAAGTTGGTTCTCATTCTTACTCAAGCCAAAGTTAAAGCAGCTACAGGGGAATGGCCAGTGTCTGTGTCCAATACATGGAATGGGACAAAATTACTTATGGATGATGCTATTCCCGAAATTACACAATTCAAACAACGAATGTCTGCTGATGACTTAACAATTATGAGTCAATCTGGAAGTCAATTGACTCAGTCCTCCCAATACAGTGATGCTGAAAGGTTTGTTTATAAATGTTTGGTGAAGAGCGTATCTGAAATTCCATTGATTAAAAAGGAAATGATATGTGTAACTGTGGCCACAACCACTAAGTTTAGTCTTGATAACGATGGGTGGTACTACTTGGTTTGTAATCATTGCAACAAAAGAACTAATGAAACTGGTCCTTTCAAATGCACCTATTGTGATCAAGACAACAACATGCCGACGTTGAAGTATAAACTTCAGTTGCAAGTTTGTGATGATGCGTTTAATTATGCCAACTTCGTGGTGTGGGATCAAAAATGTAGAAACATTATTGGTATTTCCGCTGAAGAATTGCAAAAGAAAATGATCAAGGTGGGCGAAGATGATCCTAAGTGCTTTCCCGATGAGTTGGATGTAATGTTAGGTTGTACTCTCGCTTTCAAACTTCGAACCCAACCAAGGAACAAATTTGCGTCTGTCATTAAAGTGTCTGACTTACCTGAAATAATCAATTACATTAAGAAGCTTATACAACCCCTTGGTGAGTGCAGTCATAAGAACATAATTGATCTAGGAGGTGATACTTCCACTGGAATGATTGTTGATTTTCGTTCAAAAGGAGTTTGTAATTTAGCAGCAAACAGTGATCATGACTTGATGAGTTTGAGTGGAACAGCTGACAATGATCCTGATAATTCATCTTTGGGTACTCCATCAAAGAGAATCGTTCCAAATAGTGGTGTATCTGTACAATCGTCTGAAGACATAGAGTCTGGTGAACTATCAGCTACCAAGCCCATGAAGACTATCAAGCAAGAGATCGACTGA 1578 0.3821 MAKKLDMIKDIDGRRETLKLGVRVLDLWYIHNRESNVHLEMILIDQMGDKIHCIVKKDEFDIWDGKLKEGDTYIMHNFKIVKNDGQYRVCDHPFKLLFIGATSVRPQPIANIPNSVYQFRSIKEVVASNFSPDLLIDLIGWVDNVKAKAQSKNVVFSLMDLSGGVVSCTLWDEYCKKFLERYNDNPNSNKLVLILTQAKVKAATGEWPVSVSNTWNGTKLLMDDAIPEITQFKQRMSADDLTIMSQSGSQLTQSSQYSDAERFVYKCLVKSVSEIPLIKKEMICVTVATTTKFSLDNDGWYYLVCNHCNKRTNETGPFKCTYCDQDNNMPTLKYKLQLQVCDDAFNYANFVVWDQKCRNIIGISAEELQKKMIKVGEDDPKCFPDELDVMLGCTLAFKLRTQPRNKFASVIKVSDLPEIINYIKKLIQPLGECSHKNIIDLGGDTSTGMIVDFRSKGVCNLAANSDHDLMSLSGTADNDPDNSSLGTPSKRIVPNSGVSVQSSEDIESGELSATKPMKTIKQEID 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01147 525 Pfam Replication factor-A C terminal domain 294 401 IPR013955 -
Viun6g01147 525 SUPERFAMILY Nucleic acid-binding proteins 8 107 IPR012340 -
Viun6g01147 525 MobiDBLite consensus disorder prediction 472 525 - -
Viun6g01147 525 CDD RPA1_DBD_B_like 137 236 - -
Viun6g01147 525 CDD RPA1_DBD_A_like 19 104 - -
Viun6g01147 525 PANTHER OS03G0429900 PROTEIN 14 398 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Viun6g01147 525 Gene3D - 246 430 IPR012340 -
Viun6g01147 525 Pfam Domain of unknown function DUF223 40 119 IPR003871 -
Viun6g01147 525 Gene3D - 110 245 IPR012340 -
Viun6g01147 525 SUPERFAMILY Nucleic acid-binding proteins 279 406 IPR012340 -
Viun6g01147 525 MobiDBLite consensus disorder prediction 472 509 - -
Viun6g01147 525 Gene3D - 3 106 IPR012340 -
Viun6g01147 525 SUPERFAMILY Nucleic acid-binding proteins 117 240 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01147 Viun-Chr6 20824100 20826716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01147 97 368 Core DNA Replication Machinery Family AT2G06510 24.080 1.62e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01147 - - vun:114180725 917.146