Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01146 ATGGGTTCGTCTTCTTCTGCAAGCCTTAGCAACTTCCATCCGTGTTGGCTATCGGTTCTTAATCCCATCAAGGACTATGTTGCCTTTGAAAAGCCCTTCTTTGTTTATTGGGAGAAAGAAATTGGTTTGCAATGCTGCACATTTATAGATCCAGAAGGAAATGCATTCGAGATACAACTGAATGAACCATTATTGGCTGAAAGAAAGTTCCCTGCAGATTTTCCACTGGAACAGGGATCTATCATTTTCGATGATGCCTTTTCCCATTTCTGGGGACCAATATTTGACTCCTCAAATCCAGATATGTACCAGAAAGTTGAGATGGTAGATCCCGTGGGCAAGAATTATGAAGTTTTCATTGAGGGATCTTACACGGGAAGGATATTTGCTAGACACGGATTAGAAAAAATGGTAACCAATTATGATCTACGTGAGGATCACGTTATGCGTCTGAATTTTATAGGGGATCGCAAATTCTTGTTTAGGATATTCTCTTTGACGGGAAATGAAGTCATTTATTCCTTGGATTTGATCAAAGATGAACCTACCATAAATGAGGAAGATGGTTTAGAAAGAGATTTTTACTACAAAACGACCAAGAATTTAACCGACTATGATGTTAATTCTTCTTCACTGTACTTGGATTCCGAGTTTGCTTCAAAAGCGTTGGTAAAGAACAGGAAAAATCATGAACTTCGCAATAGGAATGGCGGTTCTTGGTCATGCACCGTAAGATGGGCCAAGAAAAGGACACACGAATGCTTTTTAAGTTGTGGATGGAAGAAATTCTGTGCTGCAAATGGATTCCAAGCCGGAGATGTTATAACTTTTGGGGTCGATATAAATCGATCAAATATTATTAATGTTAGGAAGGATTAA 879 0.3879 MGSSSSASLSNFHPCWLSVLNPIKDYVAFEKPFFVYWEKEIGLQCCTFIDPEGNAFEIQLNEPLLAERKFPADFPLEQGSIIFDDAFSHFWGPIFDSSNPDMYQKVEMVDPVGKNYEVFIEGSYTGRIFARHGLEKMVTNYDLREDHVMRLNFIGDRKFLFRIFSLTGNEVIYSLDLIKDEPTINEEDGLERDFYYKTTKNLTDYDVNSSSLYLDSEFASKALVKNRKNHELRNRNGGSWSCTVRWAKKRTHECFLSCGWKKFCAANGFQAGDVITFGVDINRSNIINVRKD 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01146 292 SMART B3_2 198 292 IPR003340 GO:0003677
Viun6g01146 292 SMART B3_2 56 167 IPR003340 GO:0003677
Viun6g01146 292 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 111 279 IPR039218 -
Viun6g01146 292 Pfam B3 DNA binding domain 201 280 IPR003340 GO:0003677
Viun6g01146 292 SUPERFAMILY DNA-binding pseudobarrel domain 198 280 IPR015300 -
Viun6g01146 292 CDD B3_DNA 199 277 IPR003340 GO:0003677
Viun6g01146 292 ProSiteProfiles B3 DNA-binding domain profile. 197 292 IPR003340 GO:0003677
Viun6g01146 292 Gene3D - 190 291 IPR015300 -
Viun6g01146 292 SUPERFAMILY DNA-binding pseudobarrel domain 88 171 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01146 Viun-Chr6 20821859 20823395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01146 201 287 B3 DNA Binding Superfamily AT4G00260 29.545 1.34e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Viun6g01146 B3 1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01146 - - vun:114188507 612.068