Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01140 ATGGTCTCAGAGAACGAAGAGAGGGTTTGGTGTACGCTGGAAAAAGAAGGAGATGGAAGAGACAGCAGTAAAGCGGTGCAAAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGACCCTGGTGATCGTGCTGAGTTTTGTAACCAGGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTACCTGAGAGAAGGGTGTTGGTGTCCTTGGAGAGAATTCTTAGTAACTGGTCTGTGGACCCTGTCACTGTGACCCCCAATTGGGACTTTGAAATTGCTGAAGATGCTGCTGCTCCTGTTTTTCCATTTAAGAGTTTTCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCTTCTCAGGCCTATGAGAGGGCTGCTATTGAGTACTGGTTTGAACGGTGCATTCAAGATGGCCGCGATCCCACTTGTCCGGTTACTGGCACGGTTCTTAAGTCCTTGGAGCTGAAACCTAATATTGGGTTGGCTGGGGCAATTGAAGAGTGGGTTGGCAGGGTTATCGATTATCAAATCAAATCTTCAGTGCAGTATCTGAGTGAGGAATCCTTGTCTGTTGATCATGTTGAGCTTGCTCTGGATCATGTTTATAAGGTTTCTGAAGAGCACCCCTCTAGCAGATACATAATCAGAAATGCTGGTGTTGTGCAGTTGATAGTAACCCTGCTCAGTAATAACTCCAAAACTATTGGATCACGTTTGAGAACCAAAGCTCTAACGACTTTACTTAGCATGGCCAAGGATGAAGAAAGCAGGAAAATAATGCTGGAACGGGGTATCACTAGGTTGGCCGTACATAGTCTTATTGGGAGCTCTACGAAGGAGAGAGAATATGCTACCAAGTTATTACTAGAATTCTGCAATGATGAAGATTGTTGTGCAAGAATTGCATCAGAGAAAGGTGCTTTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCGTCTTTGTCAAAATTAGCTGAGGAAGTCTTGAGGCTGATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATCTCACGATTACATGATGGTTCTGTTGGTGTGAAGATAGATATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGCGCTCGAGTATTTGTGGAACTTCTGTCTAATCAAGAAGGAAGGGGACCGAGTCTGCAAGCATTGTATAATTTGTCAGGATTGGATGGTAATGCAAGCATCCTTATTGAGTCTTCAGTCCTTCCATCTCTTATAGAAGTTTTATTTGATAAGGAGGATCCATCTCATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCTAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGGATGGAAACCCAATGCATTCAGAAATTATTGTTTTAAGACTTTTGGGGCTTTTAAACTGTTTGCCTTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATTATCTCCTCAAGCATCAGAGTTAGTAGCAACTCATATCACGTCTAAGGGTGGCTTTGGAACGGTTATACCATTTCTGGAACATCCAGAAGTTGAACATAGAGTGTTTGCTTTTAAGCTCACAAGACTGCTATCTGAATGGTATAGTCAATACATTGGAAATGAGTTGAGACTTTCAAACAAGCTTACTATACTCAAAGAAAAACTGTTAAATAACCATTCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCCAATATTTCCCTCTCAGAAGGTGAAATACGGACACTTTTAGGAGGTAATTTTGTGGAATGGACTGCTGTTACTCTCAAGAACCAGCTGCGTGTTTCCAATGCAAGGTCTTCTCAGACTGCAGCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAAGAAACTCTTAATATAATTAGAGAAAATCACCTTATGGCCATTTTCTGCGAGCAGCTGGATTATAGTTCAAAACCAAAGGTAAAACGACTAGCTGCTATTGGAATGAAAAACCTGTCTGAATTTGGAAGGTCAGATACTGCTAAGGACTCTAAATTACCATCTTCCAGTGGATTCTGTTCCTCCCTTGTGCTTGTGTGCGGGAGAGCCTCTAGTCAACCTTCCACATGTCCAATTCACAACCGTCCGTGCCATGAAGATAGTCAATTGTGCCTGCTTAAGAGCAATTGTATCAAACCCCTGGTTAGTATCCTCAATGACAGTGACACCGATGTTCAGCTAGCTGCAGTGGATGCACTTTCTACTCTAGTACTACTAGATCATACATCTCGCAGTTTCAAAAGAGTTGTTGATGAGCTTGAACATTTGGGTGCAGTTGATGCTCTTACTACTCTTTTTACTGAAGTTAGATCCGAAGAGCTTCGGGAGAAGACAATCTGGATGATCGAGAAGATATTGAGAGTGGAAAATATCAGCAATCGGTATGCACTCAATCATTCTCTTGTGAGAGCTTTGGTTGAAGCCTTTAAGCATGGCAATACCAACACAAGGAAACATGCTCAGGATGCTCTTACCCTCCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGTTAGGAGATAG 2691 0.4266 MVSENEERVWCTLEKEGDGRDSSKAVQSGIVMDLARALGFDPGDRAEFCNQVKLFKGDPFRSHSVPERRVLVSLERILSNWSVDPVTVTPNWDFEIAEDAAAPVFPFKSFLCPLTKEVMRDPVVVLESSQAYERAAIEYWFERCIQDGRDPTCPVTGTVLKSLELKPNIGLAGAIEEWVGRVIDYQIKSSVQYLSEESLSVDHVELALDHVYKVSEEHPSSRYIIRNAGVVQLIVTLLSNNSKTIGSRLRTKALTTLLSMAKDEESRKIMLERGITRLAVHSLIGSSTKEREYATKLLLEFCNDEDCCARIASEKGALVLLSSIAGNMEYPSLSKLAEEVLRLMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIDMASLVGRMTLTNSCKEQIARQGARVFVELLSNQEGRGPSLQALYNLSGLDGNASILIESSVLPSLIEVLFDKEDPSHELKSLAASTIANIVSKPGHWELASADKDGNPMHSEIIVLRLLGLLNCLPSQCQVIVLRILCGITLSPQASELVATHITSKGGFGTVIPFLEHPEVEHRVFAFKLTRLLSEWYSQYIGNELRLSNKLTILKEKLLNNHSTSDERSDAAQILANISLSEGEIRTLLGGNFVEWTAVTLKNQLRVSNARSSQTAAGMQEGLIGLLLHFTRNLDQETLNIIRENHLMAIFCEQLDYSSKPKVKRLAAIGMKNLSEFGRSDTAKDSKLPSSSGFCSSLVLVCGRASSQPSTCPIHNRPCHEDSQLCLLKSNCIKPLVSILNDSDTDVQLAAVDALSTLVLLDHTSRSFKRVVDELEHLGAVDALTTLFTEVRSEELREKTIWMIEKILRVENISNRYALNHSLVRALVEAFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRVRR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01140 896 SUPERFAMILY ARM repeat 192 473 IPR016024 -
Viun6g01140 896 Gene3D - 180 707 IPR011989 -
Viun6g01140 896 Pfam U-box domain 110 179 IPR003613 GO:0004842|GO:0016567
Viun6g01140 896 SMART arm_5 426 469 IPR000225 GO:0005515
Viun6g01140 896 SMART arm_5 749 789 IPR000225 GO:0005515
Viun6g01140 896 SMART arm_5 664 705 IPR000225 GO:0005515
Viun6g01140 896 SMART arm_5 388 425 IPR000225 GO:0005515
Viun6g01140 896 SMART arm_5 218 262 IPR000225 GO:0005515
Viun6g01140 896 SMART arm_5 797 838 IPR000225 GO:0005515
Viun6g01140 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 179 IPR013083 -
Viun6g01140 896 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 886 - -
Viun6g01140 896 SUPERFAMILY RING/U-box 107 179 - -
Viun6g01140 896 SUPERFAMILY ARM repeat 409 836 IPR016024 -
Viun6g01140 896 ProSiteProfiles U-box domain profile. 105 185 IPR003613 GO:0004842|GO:0016567
Viun6g01140 896 CDD RING-Ubox_PUB 110 165 IPR045210 -
Viun6g01140 896 Coils Coil 337 357 - -
Viun6g01140 896 Gene3D - 747 892 IPR011989 -
Viun6g01140 896 SMART Ubox_2 109 178 IPR003613 GO:0004842|GO:0016567
Viun6g01140 896 Pfam Armadillo/beta-catenin-like repeat 755 787 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01140 Viun-Chr6 20775315 20781428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01140 107 885 U-box Gene Family AT1G20780 29.146 4.65e-84 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01140 - - gmx:102659945 1575.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01140 6 20775315 20781428 Viun6g01140 6 20775315 20781428 ECH