Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01136 ATGACACCACCCTTCACTCTCTTCCTCTCCCTCTTCGCCGTTTTTTCTATAACCGCCGTGCACGGCCTCGGCTCAGCCGCCACCGTGGCCATCACATACGGCACCGCCACGGTGTGCGGCATCGTCGCCGGGGAGCTTCACCACCGCATTCAGTGCTCCAGGGACGGGAGGCGCGTCCCTCTTACACTCCCCAACTCCTCCTTCGAGGCCATCTCCGGCGGCAGGAGCTTCTTCTGCGGGCTGCGCTCCGGCGGCCGGAGCCTCCACTGCTGGGACACTGCTGCCGCAGACGGTTCGCTCTGGCCGAAGAGGGTCTTCCACAGCGACGTGGTGCAGTTGGCCGACGTGGCAGTAGGTGATTCCCAGGTGTGCGCGAGGGAGGTGCACTCCGGTGTGGTGAGGTGCTGGAGAGGAAACGGGAGGGTCGAATTTGTTTCTCCCTCGGAGAGCTTAAGGTTTCGGAGTGTCACATGTGGTCGTGGTTTTTCATGTGGGATATTGAGAGAGAGCGGGAGGGTTGTGTGTTGGGGTGGTGGTGGTGGTGGTGAAGAGGGTGCATATATCAGCGATGAAATTCAAAGAAAGTTCGAGAATTTTTCTATGTCGAGTTTGGTTGCTGGGGTGTCTCATGCATGTGGTTTGACTCTTCACGGGGCTTTGGTTTGTGGAGGGAACAACGGTTCAGGTCAACTTGGAAACAGTGTTTTTTTAGGTTCTTTGGATTTTTCGGGTCTTGCTTTGGGAGAGGGTTTCACGTGTGGTATTAGGCGGAGGAATGGGGTTGTTGTGTGTTGGGGTAATGATTTTGACAGTGACGTGGTGAAGGGTGTTTCTTTTGAGTCTCTTGTTGCTGGTTTGGATTATGTTTGTGGGTTGATGACTGGGAATTTGTCTGTGGTTTGTTGGGGTGGTAAGGGTGTGGCTAATGAGATTCCATTGGGAGAGATTCTCCCAGCTCCTTGTGTTGAGGGTGGATGTGGTAGCTCTTGTAGCACATATCCTGATTCTGATGCTCTTTGTCATGGGTCTGGGAGTATTTGTTATGCTTGCCAAACGGAGGTTCCACTGGCTGTGCCATTGTTTCCACCACCACCATCATCATCATCATCATCATCACAAGTGCCTTCATCACATGAAGGAAGAAACTTGAAAGAGTTTTTGGTGTTTCTGGTTGTTGGATCAGTTGGGGCTTTTGCGGGTCTATGTGCTATTGTTTATTTCCTTTGGTTTGGTGCAAAGAGGGTTTTGGTGAGGAGAGAATTAAGTAACAGTTCTGTGAAGCCTACAAGCTCAGAGAGTGATGCGTATGTGGATATAATCCCAATGCCTAATGTTGGATCCAATGGAACAACCTTCAGAACTTTTTCTAGCAAAAGCCACGGGTCAAGAAGATTGAGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTGGACAGGACTGAGAGTTTCTCATTGCGTGAACTGGCAACAGCCACAGACAATTTCTCAATGTACAATAAGATAGGTGCTGGTAGCTTCGGCAGTGTTTACAAAGGCACTCTAGGAGATGGTCGTGAAGTGGCCATTAAAAGAGGAGATACTAGTACTGTGAAGAAGAAATTTCAGGAGAAAGAAACTGCTTTTGATTCTGAATTGGCCATGCTGTCACGGCTTCACCACAAGCATTTGGTGAGGCTAATTGGGTTCTGCGAGGAGAATGAGGAGAGGCTTCTGGTGTATGAGTACATGAGCAATGGCTCACTTTATGACCATTTGCATGACAAAAGCAATACTGAGAAGAGTAGCAGCATCTTAAATTCTTGGAAGATGAGGATCAAGGTTGCATTGGGTGCTGCTAGGGGAATTGAGTACATTCACAACTATGCTGTGCCACCCATTATTCACAGGGATATCAAGTCATCAAATATACTTTTGGACTCAAACTGGAATGCCAGAGTATCTGATTTTGGATTGTCACTAATCTGGCAAGAGAGTGAGCAAGAATTGATGTCCACCAAGGCAGTAGGAACTGTAGGGTACATAGACCCTGAGTACTATGTGTTGAATGTGCTAACCACAAAGAGTGATGTGTATGGTTTGGGAGTGGTGATGCTGGAGCTTCTGACAGGAAAAAGAGCAGTGTTCAAAAGTGAAGATGATTCAAGTCCTATAGGAGTAGTGGAACACACAGGGCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTACAGAGTTGGACAACCAGAAGTGAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCACTGTGTGAACATGGAAGGAAAAGAAAGGCCAGAAATGACTGACATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAAGGTAGCCCTACCAGCATCTCCCTTGCTTCCTTCTCTGCCCCTCTTGAATGA 2412 0.4859 MTPPFTLFLSLFAVFSITAVHGLGSAATVAITYGTATVCGIVAGELHHRIQCSRDGRRVPLTLPNSSFEAISGGRSFFCGLRSGGRSLHCWDTAAADGSLWPKRVFHSDVVQLADVAVGDSQVCAREVHSGVVRCWRGNGRVEFVSPSESLRFRSVTCGRGFSCGILRESGRVVCWGGGGGGEEGAYISDEIQRKFENFSMSSLVAGVSHACGLTLHGALVCGGNNGSGQLGNSVFLGSLDFSGLALGEGFTCGIRRRNGVVVCWGNDFDSDVVKGVSFESLVAGLDYVCGLMTGNLSVVCWGGKGVANEIPLGEILPAPCVEGGCGSSCSTYPDSDALCHGSGSICYACQTEVPLAVPLFPPPPSSSSSSSQVPSSHEGRNLKEFLVFLVVGSVGAFAGLCAIVYFLWFGAKRVLVRRELSNSSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSHGSRRLRRHRSGSSSKHVDRTESFSLRELATATDNFSMYNKIGAGSFGSVYKGTLGDGREVAIKRGDTSTVKKKFQEKETAFDSELAMLSRLHHKHLVRLIGFCEENEERLLVYEYMSNGSLYDHLHDKSNTEKSSSILNSWKMRIKVALGAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSLIWQESEQELMSTKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKSEDDSSPIGVVEHTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNMEGKERPEMTDIVANLERALAFIEGSPTSISLASFSAPLE 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01136 803 Pfam Protein kinase domain 497 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01136 803 Gene3D - 65 348 IPR009091 -
Viun6g01136 803 MobiDBLite consensus disorder prediction 459 473 - -
Viun6g01136 803 ProSiteProfiles Protein kinase domain profile. 495 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01136 803 SUPERFAMILY RCC1/BLIP-II 24 267 IPR009091 -
Viun6g01136 803 Gene3D Phosphorylase Kinase; domain 1 456 575 - -
Viun6g01136 803 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 201 789 IPR044815 GO:0004674
Viun6g01136 803 SMART serkin_6 495 786 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01136 803 CDD STKc_IRAK 501 781 - -
Viun6g01136 803 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Viun6g01136 803 SUPERFAMILY Protein kinase-like (PK-like) 472 779 IPR011009 -
Viun6g01136 803 FunFam receptor-like protein kinase FERONIA 457 575 - -
Viun6g01136 803 Gene3D Transferase(Phosphotransferase) domain 1 576 787 - -
Viun6g01136 803 ProSitePatterns Protein kinases ATP-binding region signature. 501 532 IPR017441 GO:0005524
Viun6g01136 803 FunFam Serine/threonine-protein kinase-like protein CCR4 576 794 - -
Viun6g01136 803 MobiDBLite consensus disorder prediction 451 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01136 Viun-Chr6 20692105 20694935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01136 6 794 Receptor kinase-like Gene Family AT3G55950 50.184 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Viun6g01136 Pkinase 5.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01136 - - gmx:100776682 1293.1