Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01129 ATGGCACACCACACCATGGAGGAGGACTTGAACTTGAACATCTTGGAGATGAACACCGAGCCTTGTAACAACAGCAATGCAACAACATGTGCAAAGACAGCACCACCACCACAGGAACAGAACAGCCTCACATCTTCAACTGTCACAAAGAAGTGTCCATTTCTGGTCACCAAATTTCACTGCCAAATGCTTAGGAGTTTCACAGCAAATTTGAAAGTGGTTGTTTTTGGCACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATGGCCTTGGAAGGCCTTGGATTTTTGCTCTGAGCCTGCTTGGACTCGCTCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGGCCCACAGTTGGAGGGCTTCTAAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTTACCAAAACAAAGTAAATGTTGTGAAGTTCTCTCTGCTGGGTTCCATTCTCTCAAACCTTCTATTAGTTCTTGGAAGTTCACTCCTTTGTGGAGGCTTAGCCAACCTAAGGAAGGAGCAAATATATGACAGAAAACAAGCTGATGTAAACTCACTGGTCTTGTTGCTGGGGTTGCTGTGCCATTTGCTGCCATTAATGTTCAGATATGCCTTAGCAGGAGAATATCATTCAATAGCCACTAACACTCTACAGTTATCCAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCCGGATACATCTTCTTTCAATTAAAAACACATCGACAATTTTTTGATGCACAAGAGGAAGATGAAAACGAAGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTACTTGGTTGGTTGGTATGACACTTATCATATCTCTGCTTTCTGAATACGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGCTACCAATTGTGGGGAATGCTGCAGAGCATGCTGGCTCAATCATTTTTGCTTTCAAGAACAAGTTGGACATATCATTGGGTGTTGCAATGGGATCTGCAACTCAAATTTCTATGTTTGTGATTCCATTGAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGGTGTCTTGCTTTTACAATCATTGTTACAGCATTCACTCTGCAGGATGGAACTTCACACTACATGAAAGGAGTGGTTCTTTTCCTGTGCTACATCATCATTGCTGCATGCTTTTTTGTTCTCAAAACCCCACTAATTAATGAAGCATAG 1320 0.4197 MAHHTMEEDLNLNILEMNTEPCNNSNATTCAKTAPPPQEQNSLTSSTVTKKCPFLVTKFHCQMLRSFTANLKVVVFGTKLAVLFPAVPLAVVADFYGLGRPWIFALSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALYQNKVNVVKFSLLGSILSNLLLVLGSSLLCGGLANLRKEQIYDRKQADVNSLVLLLGLLCHLLPLMFRYALAGEYHSIATNTLQLSRASSIVMLLAYAGYIFFQLKTHRQFFDAQEEDENEEEKAVIGFWSAFTWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVIPLSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYMKGVVLFLCYIIIAACFFVLKTPLINEA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01129 439 Pfam Sodium/calcium exchanger protein 102 259 IPR004837 GO:0016020|GO:0055085
Viun6g01129 439 Pfam Sodium/calcium exchanger protein 286 427 IPR004837 GO:0016020|GO:0055085
Viun6g01129 439 FunFam Vacuolar cation/proton exchanger 131 275 - -
Viun6g01129 439 FunFam Vacuolar cation/proton exchanger 276 430 - -
Viun6g01129 439 Gene3D - 131 280 IPR044880 -
Viun6g01129 439 Gene3D - 281 430 IPR044880 -
Viun6g01129 439 NCBIfam calcium/proton exchanger 66 429 - -
Viun6g01129 439 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 52 432 IPR004713 GO:0006812|GO:0008324|GO:0016020
Viun6g01129 439 NCBIfam calcium/proton exchanger 85 429 IPR004798 GO:0006816|GO:0015369
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01129 Viun-Chr6 20640716 20643991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01129 19 434 Antiporters AT2G38170 64.269 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01129 K07300 - gmx:100778821 688.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01129 6 20640716 20643991 Viun6g01129 6 20640716 20643991 ECH
Viun6g01129 6 20640716 20643991 Viun8g01880 8 29567805 29573144 PCT