Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01126 ATGAGGATATCTTACAGTCCAGCAGCTCCAATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTCAGAGTTCTAATTTATGTGACTTATGGAAATGGGAATAATACAATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAGCAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTCACGGAGAGAACACTGTCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTAGAGGTGAAAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCATATGTGTTTGCAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCAACTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 618 0.4175 MRISYSPAAPIFLFLVQWADYRLAGALGLLRVLIYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFTERTLSDIDIEREEECGVCLEVKAKVVLPDCCHHMCLQCYRDWCQRSQSCPFCRNSLKRINSGDLWIYTDMNDVVDIGTISRENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01126 205 ProSiteProfiles Zinc finger RING-type profile. 109 147 IPR001841 -
Viun6g01126 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 156 IPR013083 -
Viun6g01126 205 SUPERFAMILY RING/U-box 95 152 - -
Viun6g01126 205 PANTHER RING FINGER PROTEIN 41, 151 1 197 - -
Viun6g01126 205 FunFam RING/U-box superfamily protein 91 156 - -
Viun6g01126 205 Pfam Ring finger domain 108 147 IPR001841 -
Viun6g01126 205 ProSitePatterns Zinc finger RING-type signature. 124 133 IPR017907 -
Viun6g01126 205 SMART ring_2 109 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01126 Viun-Chr6 20613813 20615910 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01126 101 150 C3H Transcription Factor Family AT5G41350 37.736 1.43e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01126 K25840 - gmx:100808567 367.466