Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01125 ATGCTAATACTCTCTGAATGCTACTCAGTTTTTCTTGAGGTGGTAAAGTGGGACCTTGAAGCTGGGATTTTTTTAAAGAAAAGGGCATTGGACCATCCAAGGGAAAGAGATGGAGGGTGCTTTCAGATGAGGATATCTTACAGTCCAGCAGCTCCAATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTCAGAGTTCTAATTTATGTGACTTATGGAAATGGGAATAATACAATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAGCAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTCACGGAGAGAACACTGTCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTAGAGGTGAAAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCATATGTGTTTGCAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCAACTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 744 0.4194 MLILSECYSVFLEVVKWDLEAGIFLKKRALDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLIYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFTERTLSDIDIEREEECGVCLEVKAKVVLPDCCHHMCLQCYRDWCQRSQSCPFCRNSLKRINSGDLWIYTDMNDVVDIGTISRENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01125 247 FunFam RING/U-box superfamily protein 133 198 - -
Viun6g01125 247 PANTHER RING FINGER PROTEIN 41, 151 22 239 - -
Viun6g01125 247 ProSitePatterns Zinc finger RING-type signature. 166 175 IPR017907 -
Viun6g01125 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 198 IPR013083 -
Viun6g01125 247 SMART ring_2 151 188 IPR001841 -
Viun6g01125 247 SUPERFAMILY RING/U-box 137 194 - -
Viun6g01125 247 ProSiteProfiles Zinc finger RING-type profile. 151 189 IPR001841 -
Viun6g01125 247 Pfam Ring finger domain 150 189 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01125 Viun-Chr6 20613813 20616329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01125 143 192 C3H Transcription Factor Family AT5G41350 37.736 2.87e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01125 - K25840 gmx:100808567 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01125 6 20613813 20616329 Viun6g01125 6 20613813 20616329 ECH