Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01124 ATGGGAAAGTGTTCCTTCAAGGACTCTCTAAAGGCTCTGGAAGCTGATATTCAGTATGCTAATACTCTGGCATTGGACCATCCAAGGGAAAGAGATGGAGGGTGCTTTCAGATGAGGATATCTTACAGTCCAGCAGCTCCAATTTTTCTATTTCTTGTTCAGTGGGCTGATTACCGCTTGGCTGGTGCTCTGGGTTTGCTCAGAGTTCTAATTTATGTGACTTATGGAAATGGGAATAATACAATGTCAATATATGAAAGGAAAGCAAGCATCAGACAATTTTACACTGTTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACGGATTTGGAGGAAAGGAAGCAGAAAGAAGTGGCTCTTAGGTACAAAGGAAAGAGTGGCTTCACGGAGAGAACACTGTCTGATATTGACATTGAAAGAGAAGAGGAATGTGGAGTTTGCTTAGAGGTGAAAGCTAAAGTTGTGTTGCCAGATTGCTGCCACCATATGTGTTTGCAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGAATAGCCTGAAGAGAATCAACTCCGGGGACCTTTGGATTTACACAGACATGAATGATGTTGTTGATATTGGGACAATTTCCAGAGAGAATTGCAAGAGGCTGTTTCTTTACATAGAGAAGTTGCCTTTAATTGTTCCAGATCCCAGATACGTGTTCTATGATCCATTTCTGAGATGA 729 0.4239 MGKCSFKDSLKALEADIQYANTLALDHPRERDGGCFQMRISYSPAAPIFLFLVQWADYRLAGALGLLRVLIYVTYGNGNNTMSIYERKASIRQFYTVIFPALLQLEKGITDLEERKQKEVALRYKGKSGFTERTLSDIDIEREEECGVCLEVKAKVVLPDCCHHMCLQCYRDWCQRSQSCPFCRNSLKRINSGDLWIYTDMNDVVDIGTISRENCKRLFLYIEKLPLIVPDPRYVFYDPFLR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01124 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 193 IPR013083 -
Viun6g01124 242 ProSiteProfiles Zinc finger RING-type profile. 146 184 IPR001841 -
Viun6g01124 242 SUPERFAMILY RING/U-box 132 189 - -
Viun6g01124 242 Pfam Ring finger domain 145 184 IPR001841 -
Viun6g01124 242 ProSitePatterns Zinc finger RING-type signature. 161 170 IPR017907 -
Viun6g01124 242 FunFam RING/U-box superfamily protein 128 193 - -
Viun6g01124 242 PANTHER RING FINGER PROTEIN 41, 151 4 234 - -
Viun6g01124 242 SMART ring_2 146 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01124 Viun-Chr6 20613813 20616395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01124 138 187 C3H Transcription Factor Family AT5G41350 37.736 1.67e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01124 - K25840 gmx:100808567 429.483