Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01123 ATGGGGGTTTCATGGGAAGAAAGTGTGACTTATTCCATCAACGCAATCTACCTTCTGTTCTCAGCGTACCTCGTCTTTGTGATGCAAATTGGGTTTGCCATGATATGTGCAGGTTCGGTGCGTGCCAAAAATGCTATGAACATAATGCTCACAAACGTGGTTGATGCAGTGGTTGGTAGCATCTCCTTCTACCTCTTCGGTTTTGCATTTGCATATGGCACTTCCAACGCTTTCATCGGCACTCATTTGTTTGCTCTAGCCCACATTCCAAATGCCACTTACGACTATGCTTTCTTCCTTTACCAATGGGCTTTTGCTATAGCTGTCACAGGCATCACAAGTGGATCCATAGCTGAGAGAACTCAATTCAGTGCCTATCTTGTTTTCTCGTTTTTCCTCAGTGGCTTTGTGTACCCAGTTGCGGTTCATTGGGTGTGGTCATCCAGTGGTTGGCTCAGTCCAAGTTCAACTCACTTGTTGTTGGGCTCAGGAGCCATTGACTTTGCCGGGAGTGGAGTGGTGCATTTGGTTGGTGCAGTTGCCGGGCTTTGGGGGTCCATCATAGAAGGCCCACGGACCGGAAGATTCGATGCTTCGGGCAGGCCCATGCCTCTGAGAGGCCATAGTGCAACACTAGTTGTGCTTGGAACGTTTTTGCTGTGGTTTGGTTGGTTTGGATTCAATCCAGGATCCTTTGACAAGATCCTTGTATCCTATCCCGGCACGTCGGATCAGGGTAATTGGACCTCGGTGGGTCGAACTGCCGTGACAACCATATTAGCTGGTTCGACGGCCGGGATAGTTACCCTGTTTGGTCGACGGTTGTTAGTCGGCCACTGGGATGCGATGGATGTGTGCAATGGCTTGCTTGGTGGGTTTGTTGCCATCACCTCCGGATGCTCTGTTGTTGAGCCGTGGGCCGCCATTATTTGCGGGTTTGTGTCGGCTTGGGTTCTGATTGGGCTGAACATTGTGGCCCTAAAGTTGAACTATGATGATCCATTAGAGGCAGCCCAATTGCATGGAGGGTGTGGCACTTGGGGTTTGTTGTTTACTGGGTTGTTTGCCAAAGAGGAGTTTGTGATTCAAGTGTATAATTCTGGTGAGATTGGGGTTTCAAGACCCTATGGTGTCCTACTTGGAGGTGGTTGGGGATTGTTTGGAGCCCAAGTGATTGAGATTTTGACAATCTTTGGATGGGTAAGTGTAACAATGGGCCCTATATTCTATGCCCTGCACAAGCTTGAGATATTGAGAATTCCTGTTCATGAGGAAGTTACTGGCCTTGACATTTCTTGTCATGGAGGCTATGCTTATGCTCCAGAAAACTATCATCCCAGACTTTATGGAGATTACATGCCTATTCAACATACCCTGTCCTAG 1383 0.483 MGVSWEESVTYSINAIYLLFSAYLVFVMQIGFAMICAGSVRAKNAMNIMLTNVVDAVVGSISFYLFGFAFAYGTSNAFIGTHLFALAHIPNATYDYAFFLYQWAFAIAVTGITSGSIAERTQFSAYLVFSFFLSGFVYPVAVHWVWSSSGWLSPSSTHLLLGSGAIDFAGSGVVHLVGAVAGLWGSIIEGPRTGRFDASGRPMPLRGHSATLVVLGTFLLWFGWFGFNPGSFDKILVSYPGTSDQGNWTSVGRTAVTTILAGSTAGIVTLFGRRLLVGHWDAMDVCNGLLGGFVAITSGCSVVEPWAAIICGFVSAWVLIGLNIVALKLNYDDPLEAAQLHGGCGTWGLLFTGLFAKEEFVIQVYNSGEIGVSRPYGVLLGGGWGLFGAQVIEILTIFGWVSVTMGPIFYALHKLEILRIPVHEEVTGLDISCHGGYAYAPENYHPRLYGDYMPIQHTLS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01123 460 PANTHER AMMONIUM TRANSPORTER 11 434 - -
Viun6g01123 460 SUPERFAMILY Ammonium transporter 11 420 - -
Viun6g01123 460 Gene3D Ammonium transporter AmtB like domains 4 450 IPR029020 -
Viun6g01123 460 FunFam Ammonium transporter 2 448 - -
Viun6g01123 460 Pfam Ammonium Transporter Family 17 439 IPR024041 GO:0008519|GO:0016020|GO:0072488
Viun6g01123 460 NCBIfam ammonium transporter 14 439 IPR001905 GO:0008519|GO:0016020|GO:0072488
Viun6g01123 460 ProSitePatterns Ammonium transporters signature. 167 192 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01123 Viun-Chr6 20611810 20613783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01123 7 443 Inorganic Solute Cotransporters AT1G64780 65.991 0.0 594
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01123 K03320 - pvy:116129597 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01123 6 20611810 20613783 Viun6g01123 6 20611810 20613783 ECH