Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01121 ATGCAAATGAAGAAAACACCAGTTCACAGTTTGCATCAATCTAATCAAGGAAAAAGGAACGTTGGTGTCCAAGATAGAGGTGCAGGCAATGGCACCCACAAGCGCAGTGTTGAGAACCATTCTGTTCTGACATATTTCAATTCTGTGAAGAATTTTTTTTCATTTTTTCTATCTGGGAAAAGAAAATTTGCCTCAGAATCCCCTCAGAGTGAAGATGGAAAGACCACACACAAGGTCGGAGGGGTATCGTCTTCAGCAGATGTATCGTCTGATAGTTCTAGGAGTTCATCAAAATATGTATTCTCTCAATCCTCTACATCATCTGGCACTTCAAGTAGCCACCTTGGAGTTGGGAACTTCACCTTTGAGGAAATTTACAAGGCAACAGCAAAATTCTCTCCAGACAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAAGGGAAGGCTTTATGATGGATCCCTCGTTGCTGTGAAGCGTGCCAAGAAGGATTTACAGAACAAGAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCACAGGAACCTTGTAAGGTGGCGTGGGTATTTGGAGCATGGAGATGAAAAGATTCTTGTTGTTGAATATGTTAGTAATGGAACTCTTCGAGAACATTTAGATGGTGTTCGGGGAAATGGACTAGAAATTGGTGAGCGTCTGGACATAGCCATTGATGTAGCTCATGGAATTACTTACCTTCACATGTACACAGATCATCCAATTATTCATAGGGATATCAAAGCATCAAATATCTTGATCACTGATAAACTAAGGGCCAAAGTAGCAGACTTTGGTTTTGCTCGGTTGGGTTCAGAAGACCCTGCTGCAACCCATATTTCAACTCAAATCAAAGGAACAGCTGGGTACATAGATCCTGATTACATGCGAACGCACCATCTATCTGAAAAAAGTGATGTCTATTCCTTTGGTGTGTTGCTTGTTGAATTGATCACAGGACGACATGCAGTTGAACCAAAGAGACCTCTCAGTGAGAGAGTTACGATAAAATGGGCAATGCAGTTGTTGAAACAAGGAGAAATAGTGATTGCCATGGATCCAAGACTAAAGAGAAATCCAGTATCAAACAAAGCAGTGCAAAAGGTTCTGAAGCTAGCTTTCCAGTGCCTTGCACCGGTGAGGCGATCACGGCCATCTATGCAGAGTTGTGCAGAGGTTCTGTGGGAAATCCGCAAAGACTATACAGATAGATCATCTTCTCATACTCATAATGGTTCTCACCATTCTGCAAATTTCCCTCAAAGAGATGGCAGAAAGAACAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCTGCATAA 1371 0.4128 MQMKKTPVHSLHQSNQGKRNVGVQDRGAGNGTHKRSVENHSVLTYFNSVKNFFSFFLSGKRKFASESPQSEDGKTTHKVGGVSSSADVSSDSSRSSSKYVFSQSSTSSGTSSSHLGVGNFTFEEIYKATAKFSPDNKIGEGAFGTVYKGRLYDGSLVAVKRAKKDLQNKNLAEFKNEINTLSKIEHRNLVRWRGYLEHGDEKILVVEYVSNGTLREHLDGVRGNGLEIGERLDIAIDVAHGITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGSEDPAATHISTQIKGTAGYIDPDYMRTHHLSEKSDVYSFGVLLVELITGRHAVEPKRPLSERVTIKWAMQLLKQGEIVIAMDPRLKRNPVSNKAVQKVLKLAFQCLAPVRRSRPSMQSCAEVLWEIRKDYTDRSSSHTHNGSHHSANFPQRDGRKNRHKTYGIEDGKGYKFVSA 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01121 456 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Viun6g01121 456 SMART serkin_6 132 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01121 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Viun6g01121 456 MobiDBLite consensus disorder prediction 430 444 - -
Viun6g01121 456 ProSiteProfiles Protein kinase domain profile. 132 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01121 456 Pfam Protein tyrosine and serine/threonine kinase 135 404 IPR001245 GO:0004672|GO:0006468
Viun6g01121 456 MobiDBLite consensus disorder prediction 65 95 - -
Viun6g01121 456 MobiDBLite consensus disorder prediction 415 444 - -
Viun6g01121 456 MobiDBLite consensus disorder prediction 74 95 - -
Viun6g01121 456 SUPERFAMILY Protein kinase-like (PK-like) 107 408 IPR011009 -
Viun6g01121 456 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 107 424 - -
Viun6g01121 456 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 96 208 - -
Viun6g01121 456 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 209 419 - -
Viun6g01121 456 Gene3D Phosphorylase Kinase; domain 1 91 208 - -
Viun6g01121 456 Gene3D Transferase(Phosphotransferase) domain 1 209 431 - -
Viun6g01121 456 MobiDBLite consensus disorder prediction 1 35 - -
Viun6g01121 456 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01121 Viun-Chr6 20546974 20550232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01121 125 408 Receptor kinase-like Gene Family AT5G59700 43.662 1.01e-67 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Viun6g01121 PK_Tyr_Ser-Thr 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01121 - - gmx:100815871 705.671