Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01112 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCCTCACCTTACATGTACAACACCAATTGGCTTTTGGATGATAACAGGACCAACACCAAATGGACCCCTGCAGAGAACAAGCTGTTTGAAAATGCTCTTGCAGTGTATGATAAGGACACCCCGGATCGGTGGCACAAGGTGGCTGAGATGATACCAGGAAAGACAGTTATGGATGTGGTGAAACAGTACAAGGAATTGGAAGCAGATGTTTGTAACATAGAAGCTGGCTTGATCCCGATTCCAGGCTACAGTACCACCACCTCACCCTTCACCCTAGACTGGGTGAACACTCCTGGCTACGATGGCTTCAAAGGCCTCACTGCTAAGAGATCCTCCTCTGGCAGACCTCCTGAGCAGGAAAGGAAGAAAGGGGTGCCATGGACTGAAGAGGAACACAAGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATTTCACGCAATTTTGTGATCACTCGAACACCAACTCAAGTTGCAAGTCACGCGCAGAAGTACTTCATCAGGCAACTTTCAGGAGGCAAAGACAAGAGGAGGGCTAGCATCCATGACATAACAACAGTGAATCTCACAGAAACCACCAGAACTTCTTCAGAAGATAGCAGCAAAAGATCCACTTCACCACAGCATTCTGTGATGCTCTCACACCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAATTTCCAGTGCTGCCTCATCAGGAGTGAATTTCCAATGGAGTAATCAGTCAAATGCAGGAGTGGCCATGGCTCTGAATCCTGCACATGAACAAGTGTTTGTCTCCTCCCCTTATGGCCTTAACTCATATGGGTTTAAGGTGCAGGGCCAAAGTCTGCACAGAAGTCCTCTCCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAGCACTATTCCCATGCATGA 972 0.4835 MKWEMEILPPASPYMYNTNWLLDDNRTNTKWTPAENKLFENALAVYDKDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCNIEAGLIPIPGYSTTTSPFTLDWVNTPGYDGFKGLTAKRSSSGRPPEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSEDSSKRSTSPQHSVMLSHQQQQQQQQQPISSAASSGVNFQWSNQSNAGVAMALNPAHEQVFVSSPYGLNSYGFKVQGQSLHRSPLHESSYLGPQTPNMVFQMQPSQHYSHA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01112 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Viun6g01112 323 SMART sant 133 183 IPR001005 -
Viun6g01112 323 SMART sant 27 79 IPR001005 -
Viun6g01112 323 CDD SANT 30 76 IPR001005 -
Viun6g01112 323 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Viun6g01112 323 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Viun6g01112 323 MobiDBLite consensus disorder prediction 117 136 - -
Viun6g01112 323 MobiDBLite consensus disorder prediction 198 247 - -
Viun6g01112 323 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Viun6g01112 323 Gene3D - 135 185 - -
Viun6g01112 323 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
Viun6g01112 323 MobiDBLite consensus disorder prediction 192 247 - -
Viun6g01112 323 NCBIfam myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Viun6g01112 323 FunFam Transcription factor SRM1 23 90 - -
Viun6g01112 323 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Viun6g01112 323 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Viun6g01112 323 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Viun6g01112 323 FunFam transcription factor MYB1R1 135 186 - -
Viun6g01112 323 ProSiteProfiles SANT domain profile. 26 76 IPR017884 -
Viun6g01112 323 CDD SANT 136 181 IPR001005 -
Viun6g01112 323 Gene3D - 23 90 - -
Viun6g01112 323 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 24 263 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01112 Viun-Chr6 20473829 20476601 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g01112 Myb_DNA-binding 1.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01112 - - gmx:100784163 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01112 6 20473829 20476601 Viun6g01112 6 20473829 20476601 ECH