LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun6g01103	ATGGCATCATCCATTGCCACCTTCTTCAACAAGTTCCTCTATCTCCTCATCCTCTTGCTCCACCTTGGCTGCTTCATCTTCACCACCACCACCGGAGGAAAAAAAGCGCCACCATCAAAGAAACGCAAAATCTCACCTTCATCCCAACCCTCCTCCCCTTCCCACCCTAAATTCAAAACCCACAAAGCCCTGTCCTCTTCTTGGCATTTCATCAAACACCTTCTTTCCATCAAGTCCTGCAAAACCCCCAAAACCGCCACCTCCCAATTATCCCCTCAATCATCCGCCGCCACCTCCACGACCACCGTCTCCGCCGCCGCAGCGCACTCCCTCGTTTCCCTAACACAACCCGACCCGGACAGAAAACCACCCGGGTCTTGTCCCGAATCCGACATTTCCGCCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACCGCGTGCGGCGAGATCTTCCAGAAACCCCACCTCTTGGAAACCCACCAAACCCTCAAACACGCGGTTTCGGACCTATCCGGATCCGACCCGGGTCACAACATCGTCCAGATCATCTTCAAATCGGGTTGGCCTGAATCCAAACCCTCCCCCACCATAACCCGCATCCTCAAGATCCACAACAGCCCAAAGATCCTCGCGAAGTTCGAGGAGTACCGCGAGGTCGTGAAGTCCAAAGCGGCACGTCACGGCGCCCTCACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGCAACGAGCTCATGCGCTTCCACTGTTCCACGTTTCTATGCGACTTGGGACACAGCGGGGATTCCTCAATTTGTTCGCAGCAATTTTGTAATATATGTGGAATTATTAAGTCGGGGTTTTCTCCAAAACTCGACGGAATTGCCACGCTGTCCACCAGCTGGCGTGCACACGTGGCTATACCAGATGACGTGGAACAAGAATTCCGCTTCATGAATGTCAAACGGGCCATGCTCGTTTGTAGGGTTATTGCGGGTCGGGTTGGGTCCGATTCAGACGACGCGGAAAAAGCCGATGGTGGTTTTGATTCGGTAATGGCGAGGCCAGAGACAGGGGTTTACACTCGGCTTGATGAGGAGGAGTTGTTGGTGTTTAATCCTAGGGCTGTTCTTCCTTGCTTTGTTATTGTGTATAGTGTGTGA	1158	0.5415	MASSIATFFNKFLYLLILLLHLGCFIFTTTTGGKKAPPSKKRKISPSSQPSSPSHPKFKTHKALSSSWHFIKHLLSIKSCKTPKTATSQLSPQSSAATSTTTVSAAAAHSLVSLTQPDPDRKPPGSCPESDISADTNLFFPLRNDIFPCTACGEIFQKPHLLETHQTLKHAVSDLSGSDPGHNIVQIIFKSGWPESKPSPTITRILKIHNSPKILAKFEEYREVVKSKAARHGALTRRRDERCIADGNELMRFHCSTFLCDLGHSGDSSICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPDDVEQEFRFMNVKRAMLVCRVIAGRVGSDSDDAEKADGGFDSVMARPETGVYTRLDEEELLVFNPRAVLPCFVIVYSV	385

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun6g01103	385	Gene3D	-	172	384	-	-
	Viun6g01103	385	SUPERFAMILY	ADP-ribosylation	174	384	-	-
	Viun6g01103	385	MobiDBLite	consensus disorder prediction	42	59	-	-
	Viun6g01103	385	ProSiteProfiles	Zinc finger C2H2 type domain profile.	147	171	IPR013087	-
	Viun6g01103	385	MobiDBLite	consensus disorder prediction	111	130	-	-
	Viun6g01103	385	PANTHER	C2H2-LIKE ZINC FINGER PROTEIN	67	383	-	-
	Viun6g01103	385	ProSitePatterns	Zinc finger C2H2 type domain signature.	149	170	IPR013087	-
	Viun6g01103	385	MobiDBLite	consensus disorder prediction	31	59	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun6g01103	Viun-Chr6	20378678	20380807	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun6g01103	68	385	C2H2 Transcription Factor Family	AT2G29660	54.103	4.24e-110	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Viun6g01103		None	None	None

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun6g01103	-		-	var:108341815	659.448