Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01101 ATGAAAGACATAGGAGGAGGTGGTGCCATTATTAATGGAAGTGAAAATTTAAGGGTCTCTAACCCTTCAAAGTCTTCCGTTGGTCCTCCTTTGACAGCCATAGAAAGGTTTTTGTGGGGACAACAGAGCCATTCCTCTCGGCAACAGCCACAGAATGGTGCAAACAATGTCCATGCAAGTGTTTTCGATGGTTTTGGTGGCTCAAACTACAACGTTTTGTGGCATAATGGTGGTAGAGAAGTGAACTTTGTTGAACAGCTTTTAGCAAATGAAGTGGTGGCTCTGAATTGGACTCAACAAGTTCCTCCACTGTGCTTGAAAGAAGATTTGCATGTGTCAGGGAAGAACAGAAAAGGGGTGGGACGAAAACCTAAGGAAGGGTCTTCTGTACCTTGGATCAAAGGCCAGTGGACCGAAGAAGAAGACAGGAAACTGGTGAAGTTGGTGAAGCAACATGGTACAGGAAAATGGTCTCAGATTGCAGAAAAGTTGGATGGAAGGGCTGGGAAACAGTGTAGAGAGAGATGGCATAATCATCTGCGTCCTGATATTAAGAAAGATGCTTGGAGTGAAGAAGAAGAAAAGATCTTAGTAAAATATCACGCCAAACTTGGAAACCGCTGGGCGGAGATTGCAAAGCAAATGAAAGGAAGAACTGAAAATGCAATAAAAAACCATTGGAATGCCACAAAGAGGAGACAAAACTCAAGAAGAAAGAACAAAAGAACAGGAATCGTAAATGGAAAGCCATTGTCCTCTATTCTGCAAGACTACATCAAAAGTCTGTCTCTCAGCAACACTTCAACTACCTCTGTGGAACAAACATTTGCTTCCCAACACTTATCCGACATTGCCACCAACAACAATTTTTCACTAATGTCTGATTCCTATGATGATGAGACATTTTTCATGCAACAACTTTTCGATGAAAACAATGCCATCGTTGAATCCGTTAAGCAGACAAAAACTATCAACAACTCTTCTCCAGGCTTTGATAGTTATCATCATCATCATCATCATCAAACCATCAACAATATTCAGCTTCTCACTGAACTCGCTCAATCAGGGTCTGTTGTTCATTCCAACCTAAACACAAACTCACACGTGTCCTTTGATGAGAGTGTTTTCCCCCCTAAAAGAACAACTACTGCTGTCAACTACCTTGGTTTTGATGTCTGTCTCTCTCATTTGCATAATGGAACTGCTGGTTCATCATTTTTCTGCAATAATGGGATTCAGAACCAGAACACGGAGTTGCAGTTGGGGAAGCAAGATTGGTTATGGGAAAGAGAGATTGGGATATAG 1305 0.4169 MKDIGGGGAIINGSENLRVSNPSKSSVGPPLTAIERFLWGQQSHSSRQQPQNGANNVHASVFDGFGGSNYNVLWHNGGREVNFVEQLLANEVVALNWTQQVPPLCLKEDLHVSGKNRKGVGRKPKEGSSVPWIKGQWTEEEDRKLVKLVKQHGTGKWSQIAEKLDGRAGKQCRERWHNHLRPDIKKDAWSEEEEKILVKYHAKLGNRWAEIAKQMKGRTENAIKNHWNATKRRQNSRRKNKRTGIVNGKPLSSILQDYIKSLSLSNTSTTSVEQTFASQHLSDIATNNNFSLMSDSYDDETFFMQQLFDENNAIVESVKQTKTINNSSPGFDSYHHHHHHQTINNIQLLTELAQSGSVVHSNLNTNSHVSFDESVFPPKRTTTAVNYLGFDVCLSHLHNGTAGSSFFCNNGIQNQNTELQLGKQDWLWEREIGI 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01101 434 Gene3D - 188 230 - -
Viun6g01101 434 SMART sant 185 233 IPR001005 -
Viun6g01101 434 SMART sant 133 182 IPR001005 -
Viun6g01101 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 235 IPR017930 -
Viun6g01101 434 Pfam Myb-like DNA-binding domain 137 195 - -
Viun6g01101 434 ProSiteProfiles Myb-like domain profile. 134 180 IPR001005 -
Viun6g01101 434 SUPERFAMILY Homeodomain-like 131 227 IPR009057 -
Viun6g01101 434 Gene3D - 133 185 - -
Viun6g01101 434 CDD SANT 188 231 IPR001005 -
Viun6g01101 434 PANTHER MYB PROTEIN-RELATED 121 278 - -
Viun6g01101 434 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 184 IPR017930 -
Viun6g01101 434 FunFam Transcriptional activator Myb isoform A 133 186 - -
Viun6g01101 434 ProSiteProfiles Myb-like domain profile. 181 231 IPR001005 -
Viun6g01101 434 CDD SANT 137 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01101 Viun-Chr6 20368373 20371108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01101 27 404 MYB Transcription Factor Family AT5G58850 37.500 5.08e-71 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun6g01101 Myb_DNA-bind_6 2.1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01101 K09422 - gmx:100786295 463.766