Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01086 ATGTCTTACTCACGGAGGTCAAGGTATTCTCCTTCGCCTTCTCCATTACCGTATAAGCGATATGGTAGGTCTGTGTCCAGGTCTCTCTCAAGGTCCATGTCCAGAAGCCGTTCAAGTGTATCAAGGGATGCAGAAAATCCAGGAAACAATCTGTATGTGACAGGATTGTCTCCTAGGATCACCAAGAGGGAACTGGAGAAGCATTTTGCCGCCGAGGGGAAAGTGATAGATGTACATCTGGTGGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGTTTTGTGACGATGGAGACTGTTGAGGTGGCTGATCGATGTGTAAAGCATTTGAATCGCTCTGTACTTGAAGGGCGTGTTATTACAGTTGAGAAGGCCAGAAGGCGACGTGGTCGAACTCCAACGCCAGGGAAGTATCTAGGGCTGAGAACTGTTCGTGGGCGACGCCGCTCTCCAAGTTACTCTCCTCGTCGTTCCCCTAGCTATTCTCCTTACAGAAGAAGCTACAGTCGGTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATGGGCGGAGGCGATCCTATTCTCCATATTACTCACAGAGAAGGAGGTCTTACTCTCCATACTACAGCCGGTACAGGTCTTATGTGCGTTATGATCATTATCGACACAGGTCATATTCTCGCTCTCGCTCTCCTTATAGCAGGTCTCCCGTCAGCATCCGTGACAGATCATACTCTCCCTATGACTGGCCGGATGGTCGCTCCTACAGAAGGAACCGTTACAGGTCTGTTTCTCGAAGTGCCTCACCCAATGATCGCTATTATGGAAGGCATCGATACAGGTCTGTTTCTCACAGTGCCTCACCTAGGCCAAGGAGAAGGTCAAGGAGGAGTTACTCACGGAGTGCCACTCCTGTTTCAAGGAGGAGAGATTCTCGAAGTGTGTCTCCCAGGCCAAGGAGGAGTCCTTCAAGAAGCTCCAAGAGAAGTGCCAAATATTCGAAAGATCGGTCAAGGTCCTCCAGTGTGGTTGCAAGTTCAAGATCAGTATCCAGGTCTAATACTCCTAGATCTTCCTCTCCTTCAACTTGA 1089 0.4949 MSYSRRSRYSPSPSPLPYKRYGRSVSRSLSRSMSRSRSSVSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETVEVADRCVKHLNRSVLEGRVITVEKARRRRGRTPTPGKYLGLRTVRGRRRSPSYSPRRSPSYSPYRRSYSRSPYSSDRSRSRSYSPDYGRRRSYSPYYSQRRRSYSPYYSRYRSYVRYDHYRHRSYSRSRSPYSRSPVSIRDRSYSPYDWPDGRSYRRNRYRSVSRSASPNDRYYGRHRYRSVSHSASPRPRRRSRRSYSRSATPVSRRRDSRSVSPRPRRSPSRSSKRSAKYSKDRSRSSSVVASSRSVSRSNTPRSSSPST 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01086 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Viun6g01086 362 MobiDBLite consensus disorder prediction 282 298 - -
Viun6g01086 362 SUPERFAMILY RNA-binding domain, RBD 42 152 IPR035979 GO:0003676
Viun6g01086 362 MobiDBLite consensus disorder prediction 303 317 - -
Viun6g01086 362 MobiDBLite consensus disorder prediction 153 181 - -
Viun6g01086 362 CDD RRM_SF 51 123 - -
Viun6g01086 362 MobiDBLite consensus disorder prediction 1 49 - -
Viun6g01086 362 SMART rrm1_1 50 123 IPR000504 GO:0003723
Viun6g01086 362 Gene3D - 5 133 IPR012677 -
Viun6g01086 362 MobiDBLite consensus disorder prediction 336 362 - -
Viun6g01086 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 120 IPR000504 GO:0003723
Viun6g01086 362 FunFam Serine/arginine-rich splicing factor SR45a 2 133 - -
Viun6g01086 362 MobiDBLite consensus disorder prediction 223 362 - -
Viun6g01086 362 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 260 - -
Viun6g01086 362 MobiDBLite consensus disorder prediction 25 49 - -
Viun6g01086 362 MobiDBLite consensus disorder prediction 126 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01086 Viun-Chr6 20273286 20276833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01086 50 131 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 3.19e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01086 - - gmx:100808038 217.624