Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01080 ATGGATTCGCACTGGAGCTCTCGCCAAACGTTTGAACGCTACCTTTATGATTATCTTGTCAAAAGAAACATGCACCACACTGCTGAGGTTTTCAGGAACGAGACTAATCTTCATCTGGGTCCCGCTGCTTCTTCCACTGATGCTGTGGATGTCCCAGAAGGATTTTTGCTGGAGTGGTGGTCTCTCAACAATGATTTTGAATACTTCAGACAAATGCATGAGAAACGTGGGTTGTTCAGAGGAATGCAAGGATGTAATGCTTTTCCAGAAGTAGGGTCTTCCATGAATGTTCGACCAAAGTATCAATTTCCTAATAATTTTACTCCTGTTAAAGCACTCAACATAGGAAGCAACTTGATGCCATCACGTGTAACTGGTGAATGGCCAGTATTTTCCTCATCTTCTGCACACCACAAAGGTAGTGGTAAACTGCCACAATGTCTATTCCCATTTTCCCATCAAGAGGCATTTGGTCAAATGCAACGACTTTCATCTTCACATCAAGACAAGGTGATGACACCAGTAGAGAAAACAACAGAGGTTTCCAATGTCAATAGTTCAGAAGCAAATTCTGGATTTATTGAGGAAACAGATCCGATCATTGAGAATTTGTTAAATTCTTTTTGGTTATTTGAACCTGATGAACCAAGCCTGTTTGACAAGTCAACAGTAGGACAGAGCAGCACAAATGCCGAGAGTTTGGTGGAACGTGGAATTGGAAACACTAGTATGAATACAATTGCTGGTTCACCATTGGAAGAGGATGATAACACAAGTGACACAAGTGATTCTTCCAGCAGTTTCCAATTTGTTCTTACTGATGAAGATGTTTCAACGGACCCTCAGTTGGAATCCAATGCAGAAACATAA 870 0.4126 MDSHWSSRQTFERYLYDYLVKRNMHHTAEVFRNETNLHLGPAASSTDAVDVPEGFLLEWWSLNNDFEYFRQMHEKRGLFRGMQGCNAFPEVGSSMNVRPKYQFPNNFTPVKALNIGSNLMPSRVTGEWPVFSSSSAHHKGSGKLPQCLFPFSHQEAFGQMQRLSSSHQDKVMTPVEKTTEVSNVNSSEANSGFIEETDPIIENLLNSFWLFEPDEPSLFDKSTVGQSSTNAESLVERGIGNTSMNTIAGSPLEEDDNTSDTSDSSSSFQFVLTDEDVSTDPQLESNAET 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01080 289 SMART Lish 7 39 IPR006594 GO:0005515
Viun6g01080 289 Pfam LisH 15 35 IPR006594 GO:0005515
Viun6g01080 289 MobiDBLite consensus disorder prediction 242 289 - -
Viun6g01080 289 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 74 IPR044716 GO:0003714
Viun6g01080 289 ProSiteProfiles LIS1 homology (LisH) motif profile. 7 39 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01080 Viun-Chr6 20223116 20236560 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Viun6g01080 LisH 2.9e-06 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01080 - - vra:106776158 437.573