Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01060 ATGGCAGATCAGAGTATGGATCATTGGAAAGAGTTGAGTGCTGATTGGTATGACTTGATTGGTCAGCCGTCGCACACCTTCCATGTTCCGGCAGCCTTGCTGAGTCAACCTGTCGTCGTCGCTATGAAAACTCCTTTAATGTTGCCGTCGTTGCCGTTGCCCTTGCCGTCATCGGCGTTGCCGTCATCGGCGTTTCCGTTGCCGTCATCGGCGTTGCCGTTGCCGTCACCGTCGCTGTCGTCGTTGACGTTTCCGTCGAACAAAAGAAAAAGGATAACTTGGACAGAAGCGGAGCATAAGAGGTTTCTAGACGGACTTCATATATATGGAAAAGGAGATTGGAAAAACATCTCAGCTTACATTCAAACGAAAACTGCAATTCAAGTTGCCAGCCATGCACAAAAATATTTTATCCGTCAAACTCAAACACAACACCAGAAAAAAAGGAAAAGCATCCATGACATGGTTATGGAGAACGCATTTCATATGCAAAATTCATCTTCTTCTGGTGCAAGTTCACAGTTTTCCGATGTGCAACCACTACCCTTCAATCCTCACGTCAACGTGCCTCATCCACCAGAGCTACAACCCATGCGAGAAATGATGAACCAAAATCCTATGAATCCCAACAACATGATTCATCATCCTGCATACTTTAATCAAATGCAACCATGTTAA 678 0.4528 MADQSMDHWKELSADWYDLIGQPSHTFHVPAALLSQPVVVAMKTPLMLPSLPLPLPSSALPSSAFPLPSSALPLPSPSLSSLTFPSNKRKRITWTEAEHKRFLDGLHIYGKGDWKNISAYIQTKTAIQVASHAQKYFIRQTQTQHQKKRKSIHDMVMENAFHMQNSSSSGASSQFSDVQPLPFNPHVNVPHPPELQPMREMMNQNPMNPNNMIHHPAYFNQMQPC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01060 225 CDD SANT 93 137 IPR001005 -
Viun6g01060 225 Gene3D - 92 144 - -
Viun6g01060 225 SMART sant 90 139 IPR001005 -
Viun6g01060 225 ProSiteProfiles SANT domain profile. 94 141 IPR017884 -
Viun6g01060 225 ProSiteProfiles Myb-like domain profile. 86 137 IPR001005 -
Viun6g01060 225 Pfam Myb-like DNA-binding domain 93 137 IPR001005 -
Viun6g01060 225 NCBIfam myb-like DNA-binding domain, SHAQKYF class 90 140 IPR006447 GO:0003677
Viun6g01060 225 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 141 IPR017930 -
Viun6g01060 225 PANTHER TRANSCRIPTION FACTOR KUA1 86 216 - -
Viun6g01060 225 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01060 Viun-Chr6 20082309 20082986 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Viun6g01060 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01060 - - vun:114188497 319.701