Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01044 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGACAAGAACAGCAAGGGACGCAGCATACTGCATCATCTGCGCCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCGTGTGCTACAAATCCTTATCAAGATCCGTACTATGGGGGCATGATGGCTGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGAAGGGCAAGGGGTACGGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTGCATTCTGACTCTGCGGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCTGCAAAAGTACAGAACAGGTTTGATGCAGCTGGTTACCGAAATGGCAGTGGCTCTTACAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 1014 0.4675 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARAAKVQNRFDAAGYRNGSGSYNHHGLQSSVYHSSSGERVEEGDCSGQQLNHN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01044 337 MobiDBLite consensus disorder prediction 207 337 - -
Viun6g01044 337 Gene3D - 174 236 - -
Viun6g01044 337 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01044 337 MobiDBLite consensus disorder prediction 305 320 - -
Viun6g01044 337 MobiDBLite consensus disorder prediction 87 117 - -
Viun6g01044 337 MobiDBLite consensus disorder prediction 246 287 - -
Viun6g01044 337 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 290 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 MobiDBLite consensus disorder prediction 209 228 - -
Viun6g01044 337 MobiDBLite consensus disorder prediction 44 74 - -
Viun6g01044 337 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Viun6g01044 337 MobiDBLite consensus disorder prediction 1 30 - -
Viun6g01044 337 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Viun6g01044 337 MobiDBLite consensus disorder prediction 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01044 Viun-Chr6 19919557 19923684 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01044 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.340 7.87e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun6g01044 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01044 K08064 - gmx:100808378 647.506