Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01042 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGGTCAGATCCTCATTCCTTTCAACCTGGAAGTGTTTATTCCGAGCCTTGGTGGCGTGGTATTGGTTACAATCCCTTGGCCCAAACAATGGCTGGGGCAAATGCATCCAATTCGTCATCTCTTGAGTGCCCTAATGGTGATTCTGAGTCCAATGAAGAAGGCCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAAGATTCGCAGCCTGCTGCTCCTAACGAACCAGGAAATTATGGACAAGAACAGCAAGGGACGCAGCATACTGCATCATCTGCGCCATCCATGCGTGAAGAATGCCTTACTCAGACACCGCAGCTGGAACTTGTTGGTCATTCAATTGCGTGTGCTACAAATCCTTATCAAGATCCGTACTATGGGGGCATGATGGCTGCTTATGGTCACCAGCAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAGCCTGTATATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAAGCCCGTGCTAAAGCAGAACTTGAAAGGAAGCTAATAAAATCTAGAAAGCCATATCTTCACGAGTCTCGGCACCAGCATGCTATGAGAAGGGCAAGGGGTACGGGAGGACGATTTGCAAAGAAATCCGATGCTGAGGGCTCAAACAACTCAGGCAAGGAAAAGGATAATGATGCAAGAGCTGCAAAAGTACAGAACAGGTTTGATGCAGCTGGTTACCGAAATGGCAGTGGCTCTTACAATCATCACGGTTTGCAATCTTCGGTGTATCATTCATCCTCAGGTGAAAGAGTGGAGGAAGGGGACTGTTCAGGTCAGCAACTAAACCACAATTGA 912 0.4737 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPLAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNEPGNYGQEQQGTQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKSDAEGSNNSGKEKDNDARAAKVQNRFDAAGYRNGSGSYNHHGLQSSVYHSSSGERVEEGDCSGQQLNHN 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01042 303 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01042 303 MobiDBLite consensus disorder prediction 87 117 - -
Viun6g01042 303 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 MobiDBLite consensus disorder prediction 271 286 - -
Viun6g01042 303 MobiDBLite consensus disorder prediction 210 303 - -
Viun6g01042 303 MobiDBLite consensus disorder prediction 44 74 - -
Viun6g01042 303 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 15 276 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Viun6g01042 303 MobiDBLite consensus disorder prediction 210 228 - -
Viun6g01042 303 MobiDBLite consensus disorder prediction 239 255 - -
Viun6g01042 303 MobiDBLite consensus disorder prediction 1 30 - -
Viun6g01042 303 Gene3D - 174 236 - -
Viun6g01042 303 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Viun6g01042 303 MobiDBLite consensus disorder prediction 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01042 Viun-Chr6 19919557 19923691 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01042 16 244 CCAAT-HAP2 Transcription Factor Family AT5G12840 56.957 2.70e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Viun6g01042 CBFB_NFYA 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01042 K08064 - gmx:100808378 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01042 6 19919557 19923691 Viun6g01042 6 19919557 19923691 ECH
Viun6g01042 6 19919557 19923691 Viun8g03026 8 37474613 37478100 PCT