Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01025 ATGGGTAGCGACAGCGAGGCAGAGAGATCGGCGGTGAAAGAGAAGAAGAAGACACAGTCTTTAGCTCCCATCGCTAAACCCCTTGCCGGCAAGAAGCTTTGCAAGCGTACCCTAAAACTTGTTCGCAGAGCCGCCGAACACAAATGCTTAAAGAGAGGAGTCAAGGAGGTCGTTAAAAGCATTCGGAGAGGTCATAAAGGATTCTGTGTTATCGCTGGCAACATTTCACCGATTGATGTTATCACCCATGTTCCCGTTCTCTGTGAAGAGTCTGACATTCCATACATTTATGTCAATTCTAAAGAAGACCTTGCTGGTGCAGGAGCAACAAAGAGGCCTACTTGCTGTGTTTTGGTGCAGACTAAACCTGCAAAGGGTGAATTAGAGCAAGCAGAACAAGAGAAACTAAAGTCTGACTACGATCAAGTTGTGGCGGAAGTTAAGGAGCTTGCAGCTTCACTTTTTTGA 468 0.4615 MGSDSEAERSAVKEKKKTQSLAPIAKPLAGKKLCKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGFCVIAGNISPIDVITHVPVLCEESDIPYIYVNSKEDLAGAGATKRPTCCVLVQTKPAKGELEQAEQEKLKSDYDQVVAEVKELAASLF 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01025 155 PRINTS High mobility group-like nuclear protein signature 97 109 IPR002415 GO:0003723|GO:0005730
Viun6g01025 155 PRINTS High mobility group-like nuclear protein signature 23 36 IPR002415 GO:0003723|GO:0005730
Viun6g01025 155 PRINTS High mobility group-like nuclear protein signature 36 51 IPR002415 GO:0003723|GO:0005730
Viun6g01025 155 PRINTS High mobility group-like nuclear protein signature 53 63 IPR002415 GO:0003723|GO:0005730
Viun6g01025 155 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 148 - -
Viun6g01025 155 SUPERFAMILY L30e-like 20 131 IPR029064 -
Viun6g01025 155 FunFam H/ACA ribonucleoprotein complex subunit NHP2 18 150 - -
Viun6g01025 155 MobiDBLite consensus disorder prediction 1 20 - -
Viun6g01025 155 Gene3D - 16 151 IPR029064 -
Viun6g01025 155 PRINTS Ribosomal protein L7A/RS6 family signature 69 82 IPR018492 -
Viun6g01025 155 PRINTS Ribosomal protein L7A/RS6 family signature 85 95 IPR018492 -
Viun6g01025 155 PRINTS Ribosomal protein L7A/RS6 family signature 50 64 IPR018492 -
Viun6g01025 155 PRINTS Ribosomal protein L7A/RS6 family signature 95 109 IPR018492 -
Viun6g01025 155 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 38 122 IPR004038 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01025 50 122 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.767 3.39e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01025 K11129 - gmx:100305515 277.33