Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01023 ATGGAGACTCGTGTTGAAGGGAAACCTACTCGTGTTGCATCAGAGTTCTCAGATAACTTGTCTGAGACTTGCAAGATGGTTACTCCTAATGGAAGAGCAATGCACAAGTCCGATGATGAAATTCCTTTTGACTCTGAAATAAATTTTCACCACTCAGAATCTAGTCTGGTGGAGGTACTTGGATCACATTCTGGAGAATCTCTGACTGTTCATCGTGAAACATTGGCTGGTATTGTTTATAGGAGCATACAAGTTGTGATTTTCTCTAACAAACTCAATTTGCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGCAGAAGTTGACTGCTCATCTTGGTTGGGTCTTTGCTCTGAGTTTGTTGGGTATAATGCCTCTGGCGGAGCGGTTAGGTTATGCTACCGAGCAGCTGGCATTTTACAGTGGAGATACTGTTGGGGGTCTTTTAAACGCTACATTTGGAAATGCAACAGAATTGATCATCTCAATATATGCACTGAAAAATGGAATGACACGGGTTGTCCAGCTCTCTTTACTGGGATCAATTTTGTCCAATATGTTACTGGTGCTTGGATGTGCATTCTTATGCGGTGGGATTGTTAATCATAAGAAAGAACAAGTGTTTAACAAGGCAAGTGCTTCTGTGAATTCAGGATTGTTGTTGATGGCAGTCATGGGCATACTTTTTCCAGCTGTTCTACACTACACACACACCGAGGTTCGTGTTGGGAAGTCAGAGTTGTTCCTTTCAAGATTCAGCAGCTGTGTCATGCTTGTGGCCTATGCTGCATACCTGTTTTTTCAGTTAAAAGGTCAAAGAAGTCTCTATGTATCTGTGGACGAGGAAGAGGTTCAGAGTGGAAACAACTCAAATGATGATGAATCACCAGATATTTCTAAATGGGAATCAATAATATGGCTTTCCGTTATGACTGCTTGGATATCAATCTTGTCTGAATACTTGGTTGGCGCTATAGAGGGAGCATCTACTGCATGGGAAATTCCAATTGCATTTATTAGTGTCATATTGCTTCCGCTAGTGGGTAATGCAGCAGAGCATGCCAGTGCTATAATGTTTGCAATGAAAGATAAACTTGACATTTCCTTAGCGGTTGCAATAGGTTCATCCACACAGATATCAATGTTTGTGATACCATTTTGTGTTGTTATTGGCTGGATAATGGGGAATTCTATGGACTTGAACTTTCAACTATTTGAAACTGCGGCACTATTTCTTACTGTTATAGTTGTAGCCTTCATGTTGCAGGAAGGAACTGCTAATTACTTCAAAGGACTAATGCTTATTCTTTGCTATCTGATTGTGGCAGCCAGTTTTTATGTACATATAGATTCCTCTGAATAG 1362 0.406 METRVEGKPTRVASEFSDNLSETCKMVTPNGRAMHKSDDEIPFDSEINFHHSESSLVEVLGSHSGESLTVHRETLAGIVYRSIQVVIFSNKLNLLMPFGPLAILVQKLTAHLGWVFALSLLGIMPLAERLGYATEQLAFYSGDTVGGLLNATFGNATELIISIYALKNGMTRVVQLSLLGSILSNMLLVLGCAFLCGGIVNHKKEQVFNKASASVNSGLLLMAVMGILFPAVLHYTHTEVRVGKSELFLSRFSSCVMLVAYAAYLFFQLKGQRSLYVSVDEEEVQSGNNSNDDESPDISKWESIIWLSVMTAWISILSEYLVGAIEGASTAWEIPIAFISVILLPLVGNAAEHASAIMFAMKDKLDISLAVAIGSSTQISMFVIPFCVVIGWIMGNSMDLNFQLFETAALFLTVIVVAFMLQEGTANYFKGLMLILCYLIVAASFYVHIDSSE 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01023 453 Pfam Sodium/calcium exchanger protein 304 444 IPR004837 GO:0016020|GO:0055085
Viun6g01023 453 Pfam Sodium/calcium exchanger protein 112 269 IPR004837 GO:0016020|GO:0055085
Viun6g01023 453 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 61 450 IPR004713 GO:0006812|GO:0008324|GO:0016020
Viun6g01023 453 FunFam Vacuolar cation/proton exchanger 291 447 - -
Viun6g01023 453 FunFam Vacuolar cation/proton exchanger 143 282 - -
Viun6g01023 453 NCBIfam calcium/proton exchanger 96 446 IPR004798 GO:0006816|GO:0015369
Viun6g01023 453 NCBIfam calcium/proton exchanger 82 445 - -
Viun6g01023 453 Gene3D - 289 447 IPR044880 -
Viun6g01023 453 Gene3D - 141 283 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01023 Viun-Chr6 19758037 19762722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01023 32 453 Antiporters AT1G55730 70.379 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01023 K07300 - gmx:100799276 801.586