Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01020 ATGACGACGCACAATCTCGCCGCCGGAGATTTTTCGCTCCGTTTTTCCTCATCCACCGGCTCTCACCGCCGGAACTCTATCCGAGCCGTTGCGGCGGAAGCGGTCCAGGTGCGGCTGCCGGCACCGAGCCTTTACGAGGTGCTGCGAATCGAGCGCCACGCGTCGCCGACGGAGATCAAGTCGGCTTACCGGAGCCTCGCGAAGCGCTACCATCCCGACGCGGTGGTGCGGCATTCGGCAGAGAACGTCAGAACTGGCGAAGCCGCCGACGGAAACTTCATTCAGATCCGAAGCGCGTACGAGACGCTATCGGATCCATCGGCAAGGGCGATGTACGATCGAACGCTGACGGCGGTGAACGGCGGAAGACACCGCCAGTTTCCGGTTCCTCTTAGTCAGAATGACTCGTCGACGTTTTACGCGACGCGGAGATGGGAAACGGACCAATGCTGGTAG 456 0.614 MTTHNLAAGDFSLRFSSSTGSHRRNSIRAVAAEAVQVRLPAPSLYEVLRIERHASPTEIKSAYRSLAKRYHPDAVVRHSAENVRTGEAADGNFIQIRSAYETLSDPSARAMYDRTLTAVNGGRHRQFPVPLSQNDSSTFYATRRWETDQCW 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01020 151 Pfam DnaJ domain 44 113 IPR001623 -
Viun6g01020 151 SUPERFAMILY Chaperone J-domain 35 117 IPR036869 -
Viun6g01020 151 Gene3D DnaJ domain 31 127 IPR036869 -
Viun6g01020 151 SMART dnaj_3 42 108 IPR001623 -
Viun6g01020 151 PRINTS DnaJ domain signature 45 63 IPR001623 -
Viun6g01020 151 PRINTS DnaJ domain signature 88 108 IPR001623 -
Viun6g01020 151 PRINTS DnaJ domain signature 63 78 IPR001623 -
Viun6g01020 151 ProSitePatterns Nt-dnaJ domain signature. 93 112 IPR018253 -
Viun6g01020 151 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 10 151 - -
Viun6g01020 151 ProSiteProfiles dnaJ domain profile. 43 116 IPR001623 -
Viun6g01020 151 CDD DnaJ 45 105 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01020 Viun-Chr6 19741803 19742531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01020 45 113 C2H2 Transcription Factor Family AT1G74250 46.377 2.01e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01020 - - var:108320973 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01020 6 19741803 19742531 Viun6g01020 6 19741803 19742531 ECH
Viun6g01020 6 19741803 19742531 Viun8g03019 8 37440221 37441353 PCT