Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01015 ATGAATTATTCTGCGTGCGAAGTTGAAACCACACCACGTCTTGCTCAATGGAGAATCGAAAACTTTGTTTATGTCAGTTCCCGAAGATCTAAACCTTTCAAGATCGGAAAGTGGAATTGGATTTTGTCTGTGGAGAAGAACACGATTCAATTGTTTCCCCAATGGAGCAGCTATCCCATTCCCAGTCCTCCCATTGCATCTTTCATCTTTCGGGTTTTAAGTTCTGTTGGAGATCGCAGGACCATCCTGCACTCATCAGAGGTAAAGGACAAAGTTGTAGACATCAACAGTGGTTTTGCTTGGACAGTTGAGGTTCCTAAGAAATTCATTATTGAAGTTGAGTTTCTAGATTTGAAGTGTGCATCCCCAAGTGGTGGAGAACCTTGTTCCATCTGGGCAGAAGGATTTTCACAAGAAAGATCACATGCAAATGTCATAGAGTCTATCTGTAGGATGCTAACAGAAGGAATCAACACTGACATCACCATCAATGTTTCTGATGGAAGTATAGGAGCTCATAGAGCTGTTCTTGCTGCAAGATCACCCGTATTCCGCAGCATGTTTTCACATAATCTTCAGGAGAAAGAGTTGTCAACCATAAACATATCAGATATGTCACTTGAGTCATGCCAAGCTTTTCTCAATTATCTCTATGGAATCATCAGACATGAAGAGTTTCTGATTCATAGGTTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTGAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTTCTTGAGAGGCTCCAAAACGCATCTCTATATCAGTTGATGAAACTGAAGATGAGTTGTATCCGATATCTTGTGAAGTTTGGCAAAATATATGAAATCCGGGATGATTTCAATACCTTCTTGCATAATGCAGATAGGGATCTCATTGCTGAAGTCTTCCATGAAGTTCTGTCACATTCTGTTACATTGCCGGTAGGGATGAAGAGAAAATTTGATTGTCTTTAG 1008 0.4058 MNYSACEVETTPRLAQWRIENFVYVSSRRSKPFKIGKWNWILSVEKNTIQLFPQWSSYPIPSPPIASFIFRVLSSVGDRRTILHSSEVKDKVVDINSGFAWTVEVPKKFIIEVEFLDLKCASPSGGEPCSIWAEGFSQERSHANVIESICRMLTEGINTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLESCQAFLNYLYGIIRHEEFLIHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLSHSVTLPVGMKRKFDCL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01015 335 Gene3D Potassium Channel Kv1.1; Chain A 136 287 IPR011333 -
Viun6g01015 335 SUPERFAMILY POZ domain 141 255 IPR011333 -
Viun6g01015 335 Pfam BTB/POZ domain 154 255 IPR000210 GO:0005515
Viun6g01015 335 SUPERFAMILY TRAF domain-like 15 101 - -
Viun6g01015 335 CDD BTB_POZ_ZBTB_KLHL-like 159 240 - -
Viun6g01015 335 SMART BTB_4 159 257 IPR000210 GO:0005515
Viun6g01015 335 ProSiteProfiles BTB domain profile. 159 218 IPR000210 GO:0005515
Viun6g01015 335 PANTHER OS08G0495500 PROTEIN-RELATED 5 320 IPR044714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01015 Viun-Chr6 19595424 19597230 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun6g01015 BTB 2.1e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01015 K10523 - gmx:100790186 500.36