Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01013 ATGAGCGATTCTGCATACAGAGTCGAAACCACACCACGTCTTGCTCAATGGAGAATCGAAAACTTGGCTTCTTGCACTTACCGAAAATCCGATCCTTTCAAGATCGGAAAGTGGAATTGGCATTTGTCTGTGGAGAAGAACAGGGTTTTGTTTGTTAAATTGTTTCCAGAAATATCGAATCTTACAAGAGACAACCCTCCAATTGCATCTTTCATCGTTCGGGTTGTAAGTTCTGTTGGAGATCGCAGAGCCATCACACACCCAGAAATAAAGGACAAAGTTCTAAAGAACAATGAGGATTTTGTTTGGGCAATTGAGGTTCCACTAACTGGGAAATTCATTATTGACGTTGAGTTTCTAGATTTGAAGACTGCATCCCCAAACAGTGGAGAACCTTGTTCCATTTGGGCAGAAGGATTTACTCAGCAGAGATCAAATGCAAATGCCATAGAGTGTCTTGGTAGAATGCTAACAGAAGGAATCCACACTGACATCACCATAAATGTTTCTGATGGAAGTATAGGAGCTCATAGAGCTGTTCTTGCAGCAAGATCACCCGTATTTCGCAGCATGTTTTCACATAATCTTCAGGAGAAAGAGTTGTCAACCATAAACATATCAGATATGTCACTTGAGTCATGCCAAGCTTTTCTCAATTATCTCTATGGAATCATCAGACATGAAGAGTTTCTGATTCATAGGTTGGCCCTTCTTCGTGCAGCTGACAAGTATGACATATCTGATCTGAGAGATGCATGCCATGAGAGTCTTCTTGAAGACATTGACACAAAAAATGTTCTTGAGAGGCTCCAAAACGCATCTCTATATCAGTTGATGAAACTGAAGATGAGTTGTATCCGATATCTTGTGAAGTTTGGCAAAATATATGAAATCCGGGATGATTTCAATACCTTCTTGCATAATGCAGATAGGGATCTCATTGCTGAAGTCTTCCATGAAGTTCTTGATGCTTGGAAAGGATTTTGA 987 0.4022 MSDSAYRVETTPRLAQWRIENLASCTYRKSDPFKIGKWNWHLSVEKNRVLFVKLFPEISNLTRDNPPIASFIVRVVSSVGDRRAITHPEIKDKVLKNNEDFVWAIEVPLTGKFIIDVEFLDLKTASPNSGEPCSIWAEGFTQQRSNANAIECLGRMLTEGIHTDITINVSDGSIGAHRAVLAARSPVFRSMFSHNLQEKELSTINISDMSLESCQAFLNYLYGIIRHEEFLIHRLALLRAADKYDISDLRDACHESLLEDIDTKNVLERLQNASLYQLMKLKMSCIRYLVKFGKIYEIRDDFNTFLHNADRDLIAEVFHEVLDAWKGF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01013 328 PANTHER OS08G0495500 PROTEIN-RELATED 5 327 IPR044714 -
Viun6g01013 328 ProSiteProfiles BTB domain profile. 163 222 IPR000210 GO:0005515
Viun6g01013 328 SMART BTB_4 163 261 IPR000210 GO:0005515
Viun6g01013 328 SUPERFAMILY POZ domain 147 259 IPR011333 -
Viun6g01013 328 CDD BTB_POZ_ZBTB_KLHL-like 162 244 - -
Viun6g01013 328 Pfam BTB/POZ domain 156 259 IPR000210 GO:0005515
Viun6g01013 328 Gene3D Potassium Channel Kv1.1; Chain A 140 291 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01013 Viun-Chr6 19565753 19568307 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Viun6g01013 BTB 8.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01013 K10523 - gmx:100790186 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01013 6 19565753 19568307 Viun6g01013 6 19565753 19568307 ECH
Viun6g01013 6 19565753 19568307 Viun8g01762 8 28560844 28563342 PCT