Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01008 ATGGATGCTAAGTCGGCTGTAGAATTAATGGAGTCTTCTAACGAGGTTCATTTTTCTGGATTTCACATGGAGGGTTTTGAGCAAAGAAAGGACAGCATAGAACAACCAACAACCTCTGAAACTGACATGTATAAAGAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACAATAGCTTATCTGAGGAGGAACTTACAAGAGTACAGGATTACAACTTTGACCACCCTGATGCTTTTGATAATGAGCAATTGCTTCGCGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTACGATTTTAAGACTTACAAGAGCGATGTGTTAAGAAGGGTGAACCCTTCAGATGTCATAATTCTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAATGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATCCGCACAAAGCTAGGTCAGCATGACCTATGTAAAATATATCCGAATTTATATGTCATTCAATCAACTTTTCAGATAAGGGGTATGCATACGCTGATACGTGATGCTCAAACAACAAAGCATGATTTTGTATTTTACTCTGATCGGTTGATTCGATTGGTTGTTGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAACAAGTAGTCACTCCCACCGGCTCAGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGAGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTAATTCACAGGGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTACCTGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGGGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGATGAGCAGATGGTGGTTTCTTCACAGTAG 1434 0.3961 MDAKSAVELMESSNEVHFSGFHMEGFEQRKDSIEQPTTSETDMYKEPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYNSLSEEELTRVQDYNFDHPDAFDNEQLLRVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDDEQMVVSSQ 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01008 477 FunFam Uridine kinase 249 464 - -
Viun6g01008 477 SUPERFAMILY PRTase-like 248 465 IPR029057 -
Viun6g01008 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 238 IPR027417 -
Viun6g01008 477 PRINTS Uridine kinase signature 47 64 - -
Viun6g01008 477 PRINTS Uridine kinase signature 191 202 - -
Viun6g01008 477 PRINTS Uridine kinase signature 77 88 - -
Viun6g01008 477 PRINTS Uridine kinase signature 177 187 - -
Viun6g01008 477 PRINTS Uridine kinase signature 122 137 - -
Viun6g01008 477 PRINTS Uridine kinase signature 213 226 - -
Viun6g01008 477 CDD UMPK 49 245 IPR000764 -
Viun6g01008 477 Pfam Phosphoribulokinase / Uridine kinase family 49 233 IPR006083 GO:0005524|GO:0016301
Viun6g01008 477 NCBIfam uridine kinase 46 245 IPR000764 -
Viun6g01008 477 PANTHER URIDINE KINASE 37 374 - -
Viun6g01008 477 FunFam Uridine kinase 44 248 - -
Viun6g01008 477 CDD PRTases_typeI 322 437 IPR000836 -
Viun6g01008 477 Gene3D - 43 248 IPR027417 -
Viun6g01008 477 Gene3D - 249 464 IPR029057 -
Viun6g01008 477 Pfam Uracil phosphoribosyltransferase 263 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01008 Viun-Chr6 19535101 19541877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01008 1 467 PRT Gene Family AT4G26510 82.942 0.0 814
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01008 K00876 - gmx:100792258 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01008 6 19535101 19541877 Viun8g03014 8 37417760 37425607 PCT