Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01006 ATGCCTGGAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTTTCATTAAACTCCCTTCTCTTTTTTCCATGTTGTTACTCCCTTGATGAGCAAGGTGAGACTCTTATAGCATGGAAAAACAGTTTAAACATCACTTCAGATGTGTTACCATCATGGAACCCTTCAGCCTCAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACATGGAGAAGTGGTAGAGATAAACCTCAAGTCAGTGAACTTGCAAGGCTCATTGCCTTCAAATTTTCAGCCTCTAAGGTCCTTGAAGATTCTGGTGCTCTCATCAAACAACCTCACTGGAAGGATTCCAAAAGAGATTGGAGAATATCTAGAGCTCACCTTTCTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATTCCAGAAGAAATTTGCAGCATCAGAAAACTTTTGAGTTTGTCTCTCCATACAAATTTCCTTGAAGGCAGCATTCCATCCAACATTGGCAATTTATCAAGCCTTGTGAACTTGACAATCTATGATAATCATCTCAGTGGTGAAATTCCAAAGAGCATTGGCTCCTTAAGCAAGCTCCAAGTTTTCAGAGCTGGTGGCAATAAGAACCTCAAGGGTGAGATCCCATGGGAGATTGGAAACTGCACCAACTTGGTTGTTCTAGGCCTTGCAGAAACCAGCATTTCAGGAAGTTTTCCTTCTTCTATCAAAATGCTGAAAAAGGTCAAAACCATAGCCATATACACAACTCTGTTGTCAGGTTCTATTCCAGAAGAGATTGGAAATTGCAGTGAGTTGCAGAACCTGTACTTGCATCAGAACTCTATCTCTGGCTCAATACCAAGCCAAATTGGAGAACTCAACAAGCTTAAGAGTCTACTTTTGTGGCAAAACAATATAGTTGGTACTATCCCAGAAGAGCTTGGAAGCTGCACAGAGATCAAAGTCATAGACTTATCTGAAAACCTTCTCACAGGTAGCATTCCAAGAAGTTTTGGCAACCTTTTAAATCTCCAAGAGCTTCAGCTAAGTGTCAATCAGCTCTCTGGTATAATCCCCCCAGAGATTTCAAATTGTACTTCTCTGAATCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGGTTCCTGATCTTATTGGCAACTTGAAAGGCTTAACTCTTTTCTTTGCATGGAAGAACAAGCTAACAGGAAACATTCCAGATAGTCTTTCTGAGTGCCATGAACTTGAGGCACTTGATCTATCTTACAACAACTTGATTGGTCCTGTACCAAGACAACTATTTGGTTTGAGGAACCTCACCAAACTTCTGCTTCTTTCCAATGAGTTATCAGGCTTTATACCACCTGATATAGGAAACTGCACAAGCCTCTACAGGCTGAGGTTGAATCACAACAGAATAGCAGGTAATATTCCACCAGAAATTGGTAACTTGAAGAGTTTGAATTTTATGGACATGAGCAACAATCATCTCACTGGACAGATTCCTCCAACACTATCTGGATGCCAGAATCTTGAGTTTCTAGACCTTCACTCCAACAGTCTCACTGGTTCTGTTCCAGATTCTCTTCCCAAAAGCCTTCAGTTGATTGACTTGTCAGACAACAGGCTAACTGGTGCATTGAGTCACACCATTGGTTCATTGGTTGAATTAACCAAACTCAACCTTGGAAAGAATCAGATAAGTGGAAGAATCCCAGCAGAGATCTTGTCTTGTACTAAGCTACAACTTCTGGACCTGGGAAGCAATAGCTTAGATGGAGAAATTCCCAATGAAGTTGGTTTAATTCCTTCATTGGAAATCTCTCTCAATCTTAGCTTCAACCAGTTTTCTGGTAAAATTCCATCCCAGTTCTCTGGCCTTACCAAACTAGGAGTGCTTGATCTGTCTCACAACAAGCTCTCAGGGAATTTAGATGCCCTCTCTGACCTTGAGAATCTTGTCTCCTTGAATGTTTCCTTCAATGGCTTCTCTGGGGAGTTGCCTAACACTCCATTCTTCCACAAACTCCCTCTCAGTGATCTTGCTGAAAATCATGGTCTCTACATTGCCGGAGGTGCTGTGACTCCTGCTGACAAAGTCCATGCTTCATCAACCATGAAGTTCATCATGTCCATTCTCTTAAGCACCAGTGCAGTGCTAGTACTGCTCACAGTATATGTCTTGGTCCGTACTCACATGGCCGGCAATGTTCTCATGGAAAATGAAACTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTCTTGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTGACAACTCCAAATGGTGAAACACTGGCAGTTAAAAAGATGTGGTCATCAGAAGAATCAGGAGCATTCAATTCTGAAATTCAAACACTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTGGGTTGGGGATCAAACAAGAACCTGAAGCTTCTGTTTTATGACTATCTCCCTAATGGAAGCCTGAGTTCATTGCTTCATGGTTCAGGAAAGGGAAGTGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCACATGCACTAGCATATTTGCACCATGATTGTTTGCCTGCCATTATCCATGGAGATGTCAAAGCCATGAATGTGTTATTAGGTCCTGGATATCAACCTTACCTTGCTGACTTTGGCCTAGCAAGAACTGCAACTGAAATTGGTGACAGTTCTAACTCCAAGCCAGTTCAAAGACATTACCTTGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCTCTTCAGCCTATAACTGAGAAGAGTGATGTGTACAGTTTTGGTATGGTTCTACTTGAGGTTCTGAGTGGAAGGCACCCATTAGACCCAACTCTGCCAGGGGGTGCACACTTGGTTCAGTGGGTTAGAAACCACTTGGCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGTTGAGAGGGAGGGCTGATCCAACCATGCATGAAATGCTACAAACCCTAGCAGTGTCGTTTCTATGTGTAAGCACTAGATCTGAAGAACGTCCAACAATGAAGGATGTTGTTGCAATGCTGAAGGAAATTAGACCCCTTGAGACCTCAAGAACAGACTCTGATGCATTGAAGGGAGGTTTAACCTCACACACTTCTCCCCCACCTCCTAAGAATGTGGTTTCTCATGGATCTTCTACTTGCTCTTATAATTTCTCAGATAACTCCATCAGTTGA 3273 0.425 MPGSLRNLSLSPKIFSFTLLLSLNSLLFFPCCYSLDEQGETLIAWKNSLNITSDVLPSWNPSASSPCNWFGVYCNSHGEVVEINLKSVNLQGSLPSNFQPLRSLKILVLSSNNLTGRIPKEIGEYLELTFLDLSGNSLFGEIPEEICSIRKLLSLSLHTNFLEGSIPSNIGNLSSLVNLTIYDNHLSGEIPKSIGSLSKLQVFRAGGNKNLKGEIPWEIGNCTNLVVLGLAETSISGSFPSSIKMLKKVKTIAIYTTLLSGSIPEEIGNCSELQNLYLHQNSISGSIPSQIGELNKLKSLLLWQNNIVGTIPEELGSCTEIKVIDLSENLLTGSIPRSFGNLLNLQELQLSVNQLSGIIPPEISNCTSLNQLELDNNALSGEVPDLIGNLKGLTLFFAWKNKLTGNIPDSLSECHELEALDLSYNNLIGPVPRQLFGLRNLTKLLLLSNELSGFIPPDIGNCTSLYRLRLNHNRIAGNIPPEIGNLKSLNFMDMSNNHLTGQIPPTLSGCQNLEFLDLHSNSLTGSVPDSLPKSLQLIDLSDNRLTGALSHTIGSLVELTKLNLGKNQISGRIPAEILSCTKLQLLDLGSNSLDGEIPNEVGLIPSLEISLNLSFNQFSGKIPSQFSGLTKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGFSGELPNTPFFHKLPLSDLAENHGLYIAGGAVTPADKVHASSTMKFIMSILLSTSAVLVLLTVYVLVRTHMAGNVLMENETWEMTLYQKLDFSIDDIVLNLTSANVIGTGSSGVVYKVTTPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLHGSGKGSAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKAMNVLLGPGYQPYLADFGLARTATEIGDSSNSKPVQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLSGRHPLDPTLPGGAHLVQWVRNHLASKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSTRSEERPTMKDVVAMLKEIRPLETSRTDSDALKGGLTSHTSPPPPKNVVSHGSSTCSYNFSDNSIS 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01006 1090 SUPERFAMILY RNI-like 287 607 - -
Viun6g01006 1090 PRINTS Leucine-rich repeat signature 629 642 - -
Viun6g01006 1090 PRINTS Leucine-rich repeat signature 535 548 - -
Viun6g01006 1090 Gene3D Phosphorylase Kinase; domain 1 732 838 - -
Viun6g01006 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 838 - -
Viun6g01006 1090 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 194 285 - -
Viun6g01006 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Viun6g01006 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 473 1044 - -
Viun6g01006 1090 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Viun6g01006 1090 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Viun6g01006 1090 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Viun6g01006 1090 Gene3D Ribonuclease Inhibitor 35 193 IPR032675 -
Viun6g01006 1090 Gene3D Ribonuclease Inhibitor 610 694 IPR032675 -
Viun6g01006 1090 MobiDBLite consensus disorder prediction 1054 1078 - -
Viun6g01006 1090 Gene3D Transferase(Phosphotransferase) domain 1 839 1058 - -
Viun6g01006 1090 SUPERFAMILY RNI-like 82 380 - -
Viun6g01006 1090 FunFam Leucine-rich receptor-like protein kinase family protein 35 193 - -
Viun6g01006 1090 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 839 1057 - -
Viun6g01006 1090 SMART serkin_6 765 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01006 1090 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01006 1090 SMART LRR_typ_2 342 366 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 173 197 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 556 580 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 294 318 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 486 510 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 101 125 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 438 462 IPR003591 -
Viun6g01006 1090 SMART LRR_typ_2 629 652 IPR003591 -
Viun6g01006 1090 Gene3D Ribonuclease Inhibitor 272 530 IPR032675 -
Viun6g01006 1090 Gene3D Ribonuclease Inhibitor 205 271 IPR032675 -
Viun6g01006 1090 Pfam Protein kinase domain 768 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g01006 1090 Gene3D Ribonuclease Inhibitor 531 609 IPR032675 -
Viun6g01006 1090 Pfam Leucine rich repeat 464 523 IPR001611 GO:0005515
Viun6g01006 1090 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515
Viun6g01006 1090 Pfam Leucine rich repeat 610 664 IPR001611 GO:0005515
Viun6g01006 1090 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Viun6g01006 1090 SUPERFAMILY Protein kinase-like (PK-like) 763 1040 IPR011009 -
Viun6g01006 1090 SUPERFAMILY L domain-like 610 687 - -
Viun6g01006 1090 FunFam Leucine-rich receptor-like protein kinase family protein 337 609 - -
Viun6g01006 1090 FunFam Putative LRR receptor-like serine/threonine-protein kinase 610 695 - -
Viun6g01006 1090 MobiDBLite consensus disorder prediction 1048 1078 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01006 Viun-Chr6 19493908 19497833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01006 32 1089 Receptor kinase-like Gene Family AT5G56040 67.573 0.0 1429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun6g01006 Pkinase 1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01006 - - gmx:100802880 1952.95