Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00969 ATGTTCTTAAGAACCACCACCACCACCACCATCTTCTTCATCTTCATCATCACAATCTTCTTCTTTACAACAACAGCAACATCAACTCTTTCTCAGAACAACACAAACTTCTCCTTTTCCTTTCCCTCCTTCACCCTCCGCAACATAACCCTCCTCGGCGACTCCTTCCTCCGCAACGGCCTCGTCGGCCTCACCCTCTCCACCACCGTCCCCGCCTCCTCCTCCGGCACCCTCCTCTTCAACCACCCCATCACCACCACCCCTTCCTTCTCTCTCTCCACCAACTTCACCTTCTCCATCACCAACACCACCACCTCCGCCACCCCCTCCTCCACCTTCTCCTTCTTCCTCAACTCCTCCCACACCCTCCTCTCCCTCCATTTCCACCCCAACCAAAACCATCTCACCCTCGACCTCACCGCCTCCTCAAACTCCTCCATTACTAACTCCACTTCAGTTGATCTCAGCACCGACACTCCCATCACTTCTTGGGTTGATTATCATCATGCTGACAAGAAAAAGCTTCAAGTTTTCTTGAACTGCTCGTCACTAGCCTCTTCCAAGCCTCAAAACCCTGTCTTGAGCGTTGACCTTGACCTCTATGAGTACTTTAAGGATAATCTCTACTTGGGGTTTTCTGGTTCCACGCAAGGAAGCACCGAGCTTATCCAAGTCATGAGTTGGAGTCTGGAGTTTGAGTCAAACTCGCACCCTCTGATCAATGGTTCTAGCAGCCCTTCGAATGTTGCTGTTGAGGGCATTCCTGTTTCTTCTAATTCCACTGAGGGTAGTAAGAATCGTGGCAAGAGATTTTTGTTCGGACTCTGTGTTGCCATTGTTGGTCCTGCTTTTTTCTGTGTGGTGCTTGTGGTTTTGGGGTATTTTTCTTTTCTGAAGTGGCGTGGTTTGAGGAAGAAGAAAGGTTTTGGGACAGTGGGATGTTGTCCAAAAGAGTTTGGTTACAAGGAGGTGAAGTTGGCCACTAAGGGGTTTCATGCTTCAAGGGTAATTGGAAAAGGATCTTTTGGGACAGTGTACAAGGCTTTGTTTGAGTCTTCTGGAACAGTAGCTGCAGTTAAAAGGTCAAGACAGTACGATGGAAAAACCGAGTTTTTGGCAGAATTATCAATTATAGCTAGTTTGAGGCACAAGAATCTGCTTCAACTCCTAGGTTGGTGTGTTGAGAAGGGTGAGTTGCTGCTTGTGTATGAGTACATGCCAAATGGAAGCTTGGACAAGGTACTTTACCAAGAACATGAAGGTGGGAATACTAACAATGTGTTGAGTTGGGTTCATAGGGTTAACATTGCTGTCGGATTGGCTTCTGTTTTGAGTTATCTGCATCAAGAGTGTGAGCAGAGGGTGATTCACAGGGACATCAAAACAGGAAACATATTGCTAGATGGAAGCATGAACCCTAGGTTGGGTGATTTTGGGTTGGCCAAGCTTATGGACCATGACAAGAGTCCTGTTTCAACACTAACTGCAGGGACAATGGGATATCTTGCTCCTGAGTATCTTCAATGTGGAATGGCAAATGAGAAGACTGATGTGTTCAGCTATGGGGTGGTGGTGCTTGAGGTGGCTTGTGGGAGAAGGCCAATTGAGAGAGAGGAGCAAAAGATGGTGAATTTGGTGGATTGGGTTTGGGGGTTGCACTCTCAGGGGAGGATCATTGAAGCTGCTGACAGAAAGTTGAATGGGGAGTTTAAAGAAGGGGAAATGAAGAAGCTTTTGCTGTTGGGGTTGAGTTGTGCTAACCCTGATAGTGCTCAGAGACCTTCCATGAGAAGAGTGTTGCAGATTCTCAACAATGAAGGAGGAGTGTCTCTTGTGGTACCTAAAGAAAAACCAACACTTACTTTTTCTTCTGGCTTGCCTTTGAGTCTTGAAGACATTGTTTCTGATGCTGAGGAAGAGTTGAACTCTGGCCAGGTTGTGTGTGAGATCAAGATTGATTGA 1962 0.4694 MFLRTTTTTTIFFIFIITIFFFTTTATSTLSQNNTNFSFSFPSFTLRNITLLGDSFLRNGLVGLTLSTTVPASSSGTLLFNHPITTTPSFSLSTNFTFSITNTTTSATPSSTFSFFLNSSHTLLSLHFHPNQNHLTLDLTASSNSSITNSTSVDLSTDTPITSWVDYHHADKKKLQVFLNCSSLASSKPQNPVLSVDLDLYEYFKDNLYLGFSGSTQGSTELIQVMSWSLEFESNSHPLINGSSSPSNVAVEGIPVSSNSTEGSKNRGKRFLFGLCVAIVGPAFFCVVLVVLGYFSFLKWRGLRKKKGFGTVGCCPKEFGYKEVKLATKGFHASRVIGKGSFGTVYKALFESSGTVAAVKRSRQYDGKTEFLAELSIIASLRHKNLLQLLGWCVEKGELLLVYEYMPNGSLDKVLYQEHEGGNTNNVLSWVHRVNIAVGLASVLSYLHQECEQRVIHRDIKTGNILLDGSMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQCGMANEKTDVFSYGVVVLEVACGRRPIEREEQKMVNLVDWVWGLHSQGRIIEAADRKLNGEFKEGEMKKLLLLGLSCANPDSAQRPSMRRVLQILNNEGGVSLVVPKEKPTLTFSSGLPLSLEDIVSDAEEELNSGQVVCEIKID 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00969 653 Gene3D Phosphorylase Kinase; domain 1 316 405 - -
Viun6g00969 653 PANTHER - 48 605 - -
Viun6g00969 653 FunFam L-type lectin-domain containing receptor kinase VIII.1 406 622 - -
Viun6g00969 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Viun6g00969 653 Gene3D - 127 273 - -
Viun6g00969 653 ProSiteProfiles Protein kinase domain profile. 331 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00969 653 SUPERFAMILY Protein kinase-like (PK-like) 316 614 IPR011009 -
Viun6g00969 653 ProSitePatterns Protein kinases ATP-binding region signature. 337 360 IPR017441 GO:0005524
Viun6g00969 653 CDD STKc_IRAK 337 605 - -
Viun6g00969 653 Pfam Protein kinase domain 331 601 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun6g00969 653 SUPERFAMILY Concanavalin A-like lectins/glucanases 36 232 IPR013320 -
Viun6g00969 653 Gene3D Transferase(Phosphotransferase) domain 1 406 609 - -
Viun6g00969 653 Gene3D - 34 126 - -
Viun6g00969 653 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00969 Viun-Chr6 19272917 19275204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00969 16 639 Receptor kinase-like Gene Family AT5G55830 52.880 0.0 636
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Viun6g00969 Pkinase 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00969 - - vum:124824905 1013.83