Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00968 ATGGAGCATGGAGGTTCCTTCTTTCACATTGATCAACATGTGAAATCAAGTTCTGTGTTGAATGATCCATTGGAGCAAGAAAACAACTATGCCAACACAGAAACTGCAGCAGCAATAAACTCAAATGAAGTTCAAATCCCTAATGCAGTTCAAATCCCTAATTTGATTGGGAGAGATAAGAGCAAAATGCCAATTACAAATGTGACAAAAATCATGAGAAAATTTCTTCCAAACACTGCAAAAGTCTCTGATGGAGCCAAAGAGATGATTCAACAGAGTGCTACAAATTACATAACACATGTAACAAGAAAGGCCAAGGAGAAGTGCCAGAGTGAGTACAGAAAGATTATGAATGCAGATGACTTGTTATGGGCCATTGAAAATGTGGGCTTTGATGAATACATTGGGCCTCTCAGTACTTTTCTCCAACGTTGTCGCCACATTGAAGGAGGTAGTAGTAATGGGCCTGCTTTTGGGCCTACTTTTGAGCCTGAGCTTAACCCTGTGGAAATGCCCCTTAACGCTGTGGAAATGCCCCACCCTCCTCTACCACCTCCACCACCGCCGCCACTGCCACCGCCACCGCCTCCGGCGGCGGAGATGTTTGACCCAAATGGTGTGAGTGGTTTTATCAACTTTGATCCTTTTTCTCTCTTCCAACAGGATCAGCTGTGA 675 0.4415 MEHGGSFFHIDQHVKSSSVLNDPLEQENNYANTETAAAINSNEVQIPNAVQIPNLIGRDKSKMPITNVTKIMRKFLPNTAKVSDGAKEMIQQSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHIEGGSSNGPAFGPTFEPELNPVEMPLNAVEMPHPPLPPPPPPPLPPPPPPAAEMFDPNGVSGFINFDPFSLFQQDQL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00968 224 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 55 153 IPR027113 GO:0001228|GO:0006355|GO:0016602
Viun6g00968 224 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Viun6g00968 224 SUPERFAMILY Histone-fold 62 153 IPR009072 GO:0046982
Viun6g00968 224 MobiDBLite consensus disorder prediction 174 207 - -
Viun6g00968 224 Gene3D Histone, subunit A 55 156 IPR009072 GO:0046982
Viun6g00968 224 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Viun6g00968 224 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Viun6g00968 224 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Viun6g00968 224 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00968 Viun-Chr6 19267111 19271896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00968 1 209 CCAAT-HAP3 Transcription Factor Family AT1G21970 38.028 1.51e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Viun6g00968 CBFD_NFYB_HMF 1.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00968 K08065 - zof:122048380 111.309