Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00963 AACTCAAACATGGGAACCTACGTGGAAACTTTCGCAGGTGGGGAGGAACATGTCTTTCGTAGCCAGTACTCACCTGTTCCTATCCCTGACAACGTCACTCTGCCACAATATGTGCTCCAAAATGCTGAACTCTATGCTGAGAAGGTTGCGTTTGTGGATGCTGTGACTGGAAAAGGGGTGACTTACAGTGAGGTGGTGAGGGATGTAGAGAGGTTTTCAAAGGCCTTAAGATCTCTTGGTTTGAGGAAAGGGCATGTTGTGATTGTGTTGCTTCCAAATGTGGTGGAGTATGCCATTGTTGCTTTGGGGATCATGGCTGCTGGTGGGGTCTTTTCTGGGGCAAATCCAACTTCTCATGTCTCCGAGATTAAGAAACAAGCAGAGTCTGCAGATGCCAAGATATTTGTCACAGATAACACCAACTATGAAAAGGTGAAGGGTCTAGAGCTACCTGTTATTGTGGTAGATGATGAGGTTGTTGAAGGTGGCATGAAGTGGAAGAAGTTGCTTGAAGAAGCAGAGAGAGGAGGTGATGATGATTTTTGCAAGGAACCTGTTTCACAGAATGATCTGTGCGCCATGCCATTCTCATCAGGAACCACAGGGATGTCAAAGGGTGTGATGCTGACTCACAGAAATCTGGTGGCTAATCTCTGCTCTACACTCTTCAGTGTGACAAGGGAAATGGAGGGCATGGTGACCACACTAGGCCTCATTCCCTTCTTTCACATCTATGGCATCACTGGAATATGCTGTGCCACTCTTAGGAGCAAAGGGAAAGTTGTGGTTATGGGAAGGTTTGAGTTGAAGAAGTTTCTCAATGCCTTGATCACACATGAGGTCACATTTGCACCCATTGTGCCCCCAATCATTCTCAGCTTGGTCAAAAATCCCATAGTTGATGAATTTGACCTCACCAAGCTCAAACTCCAAGCTGTTATGACTGCAGCAGCACCACTTGCACCAGAACTTCTCAATGCCTTTGAACACAAGTTCCCTGGTGTTTCTGTCCAAGAGGCTTATGGACTTACTGAGCATAGCTGCATCACACTCACTCTTGCAACCAAAGGATTGGGAAGTGTTCATAAAAATTCAGTGGGATTCATCCTCCCAAACTTGGAAGTCAAGTTTGTTGATCCTGACACTGGTCGATCCCTTCCTAGGAACACACCTGGGGAACTTTGTGTGCGAAGCCAATGCGTAATGCAAGGTTACTATAAACAGGTGGATGAGACTGCACAAACCATTGACGAGAATGGATGGCTTCACACCGGTGACATAGGATTCATAGATGGTGAAGAAAATGTCTTCATTATTGATCGTATCAAGGAGTTGATCAAATACAAAGGCTTCCAAGTTGCTCCTGCAGAGTTAGAGGCCATATTGCTGAGCCATTCATCAGTTGAAGATGCAGCAGTAGTGCCAATACCAGATGAAGATGCAGGGGAAATTCCTGGTGCAAGTGTGGTTTTGAGCCCTGGTGCAAAGGAAAGTGAGGAAGATATCATGAACTATGTTGCCAACAATGCTGCACATTACAAGAAAGTGAGAGTGGTGCACTTTGTGGAAAGCATACCAAAGTCACCCTCTGGAAAAATAATGAGGAGGCTCATCAAAGACAAGATGATTCAAAAGATGAAGACAAGTTCCTCCACACAATCTCAGAATGTCTAA 1674 0.4528 NSNMGTYVETFAGGEEHVFRSQYSPVPIPDNVTLPQYVLQNAELYAEKVAFVDAVTGKGVTYSEVVRDVERFSKALRSLGLRKGHVVIVLLPNVVEYAIVALGIMAAGGVFSGANPTSHVSEIKKQAESADAKIFVTDNTNYEKVKGLELPVIVVDDEVVEGGMKWKKLLEEAERGGDDDFCKEPVSQNDLCAMPFSSGTTGMSKGVMLTHRNLVANLCSTLFSVTREMEGMVTTLGLIPFFHIYGITGICCATLRSKGKVVVMGRFELKKFLNALITHEVTFAPIVPPIILSLVKNPIVDEFDLTKLKLQAVMTAAAPLAPELLNAFEHKFPGVSVQEAYGLTEHSCITLTLATKGLGSVHKNSVGFILPNLEVKFVDPDTGRSLPRNTPGELCVRSQCVMQGYYKQVDETAQTIDENGWLHTGDIGFIDGEENVFIIDRIKELIKYKGFQVAPAELEAILLSHSSVEDAAVVPIPDEDAGEIPGASVVLSPGAKESEEDIMNYVANNAAHYKKVRVVHFVESIPKSPSGKIMRRLIKDKMIQKMKTSSSTQSQNV 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00963 557 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Viun6g00963 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 541 - -
Viun6g00963 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 20 443 - -
Viun6g00963 557 SUPERFAMILY Acetyl-CoA synthetase-like 24 544 - -
Viun6g00963 557 CDD 4CL 28 536 - -
Viun6g00963 557 Gene3D - 16 443 IPR042099 -
Viun6g00963 557 Gene3D - 444 547 IPR045851 -
Viun6g00963 557 FunFam 4-coumarate--CoA ligase 2 444 545 - -
Viun6g00963 557 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
Viun6g00963 557 Pfam AMP-binding enzyme 40 448 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00963 Viun-Chr6 19214453 19216761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00963 16 543 Monolignol Biosynthesis Gene Families AT1G62940 72.264 0.0 781
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00963 K01904 - gmx:100811418 960.674